Rui:RNAseq analysis on Hiseq111005: Difference between revisions

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* combine different files in different lanes into one file for each index:  
* combine different files in different lanes into one file for each index:  
  less *Indx3.txt > Indx3.txt
  less *Indx3.txt > Indx3.txt
* Transfer files to meangenemachine, as genome-miner is currently busy
scp ruiliu@genome-miner:~/RNAseq/Hiseq111005/Indx_seq/* ./


===Tophat===
===Tophat===

Revision as of 23:54, 14 October 2011

RNAseq analysis on Hiseq111005

Data

  • make shortcut for input data:
ln -s /media/Ext6T/111005_SN853/RNAseq Hiseq111005/
  • make a shorcut for output data:
ln -s /media/Ext4T/DataDrive.backup/RL_Scratch/RNAseq RNAseq/
  • make copy of sequence file
cp Hiseq111005/* RNAseq/
  • combine different files in different lanes into one file for each index:
less *Indx3.txt > Indx3.txt
  • Transfer files to meangenemachine, as genome-miner is currently busy
scp ruiliu@genome-miner:~/RNAseq/Hiseq111005/Indx_seq/* ./

Tophat