Rui:RNAseq analysis on Hiseq111005: Difference between revisions
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>RuiLiu m (→Data) |
>RuiLiu m (→Data) |
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* combine different files in different lanes into one file for each index: | * combine different files in different lanes into one file for each index: | ||
less *Indx3.txt > Indx3.txt | less *Indx3.txt > Indx3.txt | ||
* Transfer files to meangenemachine, as genome-miner is currently busy | |||
scp ruiliu@genome-miner:~/RNAseq/Hiseq111005/Indx_seq/* ./ | |||
===Tophat=== | ===Tophat=== |
Revision as of 23:54, 14 October 2011
RNAseq analysis on Hiseq111005
Data
- RNA libraries were used for HL101 run, Indx5-13, [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui_Liu#RNA_libraries_for_Dr._Yi_Zhang_lab
- Data was stored in genome-miner:/media/Ext6T/111005_SN853/RNAseq
- make shortcut for input data:
ln -s /media/Ext6T/111005_SN853/RNAseq Hiseq111005/
- make a shorcut for output data:
ln -s /media/Ext4T/DataDrive.backup/RL_Scratch/RNAseq RNAseq/
- make copy of sequence file
cp Hiseq111005/* RNAseq/
- combine different files in different lanes into one file for each index:
less *Indx3.txt > Indx3.txt
- Transfer files to meangenemachine, as genome-miner is currently busy
scp ruiliu@genome-miner:~/RNAseq/Hiseq111005/Indx_seq/* ./