Noi/NOTES/2011-12-25: Difference between revisions

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= HL111 (NP-BSPP-Hapmap-Nov15) mapping =  
= HL111 (NP-BSPP-Hapmap-Nov15) mapping =  
* Note: In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7. Also, one of UCLA sample (Indx94) was included in these libraries.
* Note:  
** In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7.
** Libraries from two families from HAPMAP plate, the 9 replicates for probe normalization and PGP1iPS treated with different bisulfite conversion kits (Zymoresearch and Imprint from Sigma). Also, one of UCLA sample (Indx94) was included in these libraries.
* '''NP-BSPP-Hapmap-Nov15''' library normalization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-11-15]]
* '''NP-BSPP-Hapmap-Nov15''' library normalization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-11-15]]
{| {{table}} border = 1
| align="center" style="background:#f0f0f0;"|'''Indx'''
| align="center" style="background:#f0f0f0;"|'''Sample ID'''
|-
| Indx10||GM11995 (wellID G7)
|-
| Indx11||GM11993 (wellID F2)
|-
| Indx12||**GM10861 (wellID A9)
|-
| Indx13||GM11992 (wellID C2 )
|-
| Indx14||GM11994 (wellID G9 )
|-
| Indx15||GM10860 (wellID F10)
|-
| Indx16||GM12813 (wellID E8)
|-
| Indx17||GM12802 (wellID E7)
|-
| Indx18||GM12815 (wellID G12)
|-
| Indx19||GM12812 (wellID F11)
|-
| Indx20||GM12814 (wellID A7)
|-
| Indx21||GM12801 (wellID D9)
|-
| Indx22||NA12156 (wellID B3)-1
|-
| Indx23||NA12156 (wellID B3)-2
|-
| Indx24||NA12156 (wellID B3)-3
|-
| Indx25||NA12156 (wellID B3)-4
|-
| Indx26||NA12156 (wellID B3)-5
|-
| Indx27||NA12156 (wellID B3)-6
|-
| Indx28||NA12156 (wellID B3)-7
|-
| Indx29||NA12156 (wellID B3)-8
|-
| Indx30||NA12156 (wellID B3)-9
|-
| Indx41||**PGP1iPS
|-
| Indx42||PGP1iPS-IMPRINT
|-
| Indx94||UCLA-RO_Indx94
|}
* Sequencing data is in genome-miner: '''/home/kunzhang/FreshReads/111209_SN1001'''
== Merge and trim 27bp from 3' end ==

Revision as of 23:18, 25 December 2011

HL111 (NP-BSPP-Hapmap-Nov15) mapping

  • Note:
    • In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7.
    • Libraries from two families from HAPMAP plate, the 9 replicates for probe normalization and PGP1iPS treated with different bisulfite conversion kits (Zymoresearch and Imprint from Sigma). Also, one of UCLA sample (Indx94) was included in these libraries.
  • NP-BSPP-Hapmap-Nov15 library normalization: [[1]]
Indx Sample ID
Indx10 GM11995 (wellID G7)
Indx11 GM11993 (wellID F2)
Indx12 **GM10861 (wellID A9)
Indx13 GM11992 (wellID C2 )
Indx14 GM11994 (wellID G9 )
Indx15 GM10860 (wellID F10)
Indx16 GM12813 (wellID E8)
Indx17 GM12802 (wellID E7)
Indx18 GM12815 (wellID G12)
Indx19 GM12812 (wellID F11)
Indx20 GM12814 (wellID A7)
Indx21 GM12801 (wellID D9)
Indx22 NA12156 (wellID B3)-1
Indx23 NA12156 (wellID B3)-2
Indx24 NA12156 (wellID B3)-3
Indx25 NA12156 (wellID B3)-4
Indx26 NA12156 (wellID B3)-5
Indx27 NA12156 (wellID B3)-6
Indx28 NA12156 (wellID B3)-7
Indx29 NA12156 (wellID B3)-8
Indx30 NA12156 (wellID B3)-9
Indx41 **PGP1iPS
Indx42 PGP1iPS-IMPRINT
Indx94 UCLA-RO_Indx94
  • Sequencing data is in genome-miner: /home/kunzhang/FreshReads/111209_SN1001

Merge and trim 27bp from 3' end