Noi/NOTES/2011-12-25: Difference between revisions
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>Noi (Created page with '= HL111 (NP-BSPP-Hapmap-Nov15) mapping = * Note: In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7. Also, one…') |
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= HL111 (NP-BSPP-Hapmap-Nov15) mapping = | = HL111 (NP-BSPP-Hapmap-Nov15) mapping = | ||
* Note: In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7. Also, one of UCLA sample (Indx94) was included in these libraries. | * Note: | ||
** In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7. | |||
** Libraries from two families from HAPMAP plate, the 9 replicates for probe normalization and PGP1iPS treated with different bisulfite conversion kits (Zymoresearch and Imprint from Sigma). Also, one of UCLA sample (Indx94) was included in these libraries. | |||
* '''NP-BSPP-Hapmap-Nov15''' library normalization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-11-15]] | * '''NP-BSPP-Hapmap-Nov15''' library normalization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-11-15]] | ||
{| {{table}} border = 1 | |||
| align="center" style="background:#f0f0f0;"|'''Indx''' | |||
| align="center" style="background:#f0f0f0;"|'''Sample ID''' | |||
|- | |||
| Indx10||GM11995 (wellID G7) | |||
|- | |||
| Indx11||GM11993 (wellID F2) | |||
|- | |||
| Indx12||**GM10861 (wellID A9) | |||
|- | |||
| Indx13||GM11992 (wellID C2 ) | |||
|- | |||
| Indx14||GM11994 (wellID G9 ) | |||
|- | |||
| Indx15||GM10860 (wellID F10) | |||
|- | |||
| Indx16||GM12813 (wellID E8) | |||
|- | |||
| Indx17||GM12802 (wellID E7) | |||
|- | |||
| Indx18||GM12815 (wellID G12) | |||
|- | |||
| Indx19||GM12812 (wellID F11) | |||
|- | |||
| Indx20||GM12814 (wellID A7) | |||
|- | |||
| Indx21||GM12801 (wellID D9) | |||
|- | |||
| Indx22||NA12156 (wellID B3)-1 | |||
|- | |||
| Indx23||NA12156 (wellID B3)-2 | |||
|- | |||
| Indx24||NA12156 (wellID B3)-3 | |||
|- | |||
| Indx25||NA12156 (wellID B3)-4 | |||
|- | |||
| Indx26||NA12156 (wellID B3)-5 | |||
|- | |||
| Indx27||NA12156 (wellID B3)-6 | |||
|- | |||
| Indx28||NA12156 (wellID B3)-7 | |||
|- | |||
| Indx29||NA12156 (wellID B3)-8 | |||
|- | |||
| Indx30||NA12156 (wellID B3)-9 | |||
|- | |||
| Indx41||**PGP1iPS | |||
|- | |||
| Indx42||PGP1iPS-IMPRINT | |||
|- | |||
| Indx94||UCLA-RO_Indx94 | |||
|} | |||
* Sequencing data is in genome-miner: '''/home/kunzhang/FreshReads/111209_SN1001''' | |||
== Merge and trim 27bp from 3' end == |
Revision as of 23:18, 25 December 2011
HL111 (NP-BSPP-Hapmap-Nov15) mapping
- Note:
- In sequencing sample spreadsheet, these libraries were recored in lane 1-3, but they were actually loaded in lane 5-7.
- Libraries from two families from HAPMAP plate, the 9 replicates for probe normalization and PGP1iPS treated with different bisulfite conversion kits (Zymoresearch and Imprint from Sigma). Also, one of UCLA sample (Indx94) was included in these libraries.
- NP-BSPP-Hapmap-Nov15 library normalization: [[1]]
Indx | Sample ID |
Indx10 | GM11995 (wellID G7) |
Indx11 | GM11993 (wellID F2) |
Indx12 | **GM10861 (wellID A9) |
Indx13 | GM11992 (wellID C2 ) |
Indx14 | GM11994 (wellID G9 ) |
Indx15 | GM10860 (wellID F10) |
Indx16 | GM12813 (wellID E8) |
Indx17 | GM12802 (wellID E7) |
Indx18 | GM12815 (wellID G12) |
Indx19 | GM12812 (wellID F11) |
Indx20 | GM12814 (wellID A7) |
Indx21 | GM12801 (wellID D9) |
Indx22 | NA12156 (wellID B3)-1 |
Indx23 | NA12156 (wellID B3)-2 |
Indx24 | NA12156 (wellID B3)-3 |
Indx25 | NA12156 (wellID B3)-4 |
Indx26 | NA12156 (wellID B3)-5 |
Indx27 | NA12156 (wellID B3)-6 |
Indx28 | NA12156 (wellID B3)-7 |
Indx29 | NA12156 (wellID B3)-8 |
Indx30 | NA12156 (wellID B3)-9 |
Indx41 | **PGP1iPS |
Indx42 | PGP1iPS-IMPRINT |
Indx94 | UCLA-RO_Indx94 |
- Sequencing data is in genome-miner: /home/kunzhang/FreshReads/111209_SN1001