Noi/NOTES/2012-2-29: Difference between revisions
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my $root = "/home/expresso/Noi_ASM/WGBS_12878/"; | my $root = "/home/expresso/Noi_ASM/WGBS_12878/"; | ||
my $readlength = 100; | my $readlength = 100; | ||
*Note: After finishing concatenate sequencing data into 12878.fastq, I got only 23.9 Gb data. I repeated again, but got the same amount of data, I guess that it possible that the space on expresso is not enough to put the whole data. | *Note: After finishing concatenate sequencing data into 12878.fastq, I got only 23.9 Gb data. I repeated again, but got the same amount of data, I guess that it possible that the space on expresso is not enough to put the whole data. | ||
Revision as of 05:35, 2 March 2012
ASM analysis of WGBB12878
- Directory: /media/SeqStore2/120209_HiSeq/HL_WGBS/
s_7_1_sequence.txt.gz s_7_2_sequence.txt.gz s_8_1_sequence.txt.gz s_8_2_sequence.txt.gz
- Concatenate and uncompressed data (no trimming required)
nohup less /media/SeqStore2/120209_HiSeq/HL_WGBS/*.gz > 12878.fastq
- In Master Execution Script, PipelineExecute-NP.pl
my $root = "/home/expresso/Noi_ASM/WGBS_12878/"; my $readlength = 100;
- Note: After finishing concatenate sequencing data into 12878.fastq, I got only 23.9 Gb data. I repeated again, but got the same amount of data, I guess that it possible that the space on expresso is not enough to put the whole data.