Noi/NOTES/2012-2-29: Difference between revisions
Jump to navigation
Jump to search
>Noi |
>Noi No edit summary |
||
Line 1: | Line 1: | ||
'''Link to calendar:'''[[http://genome-tech.ucsd.edu/LabNotes/index.php/noi:DMR220k_LabNotes]] | |||
= ASM analysis of WGBB12878 = | = ASM analysis of WGBB12878 = | ||
* Directory: '''/media/SeqStore2/120209_HiSeq/HL_WGBS/''' | * Directory: '''/media/SeqStore2/120209_HiSeq/HL_WGBS/''' |
Revision as of 02:17, 12 March 2012
Link to calendar:[[1]]
ASM analysis of WGBB12878
- Directory: /media/SeqStore2/120209_HiSeq/HL_WGBS/
s_7_1_sequence.txt.gz s_7_2_sequence.txt.gz s_8_1_sequence.txt.gz s_8_2_sequence.txt.gz
- Concatenate and uncompressed data (no trimming required)
nohup less /media/SeqStore2/120209_HiSeq/HL_WGBS/*.gz > 12878.fastq
- In Master Execution Script, PipelineExecute-NP.pl
my $root = "/home/expresso/Noi_ASM/WGBS_12878/"; my $readlength = 100;
- Note: After finishing concatenate sequencing data into 12878.fastq, I got only 23.9 Gb data. I repeated again, but got the same amount of data, I guess that it possible that the space on expresso is not enough to put the whole data.