Noi:Quicklinks: Difference between revisions

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* 2012_04_27
* 2012_04_27
** Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution (New report from Sciencexpress): http://www.sciencemag.org/content/early/2012/04/25/science.1220671.full.pdf
** Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution (New report from Sciencexpress): http://www.sciencemag.org/content/early/2012/04/25/science.1220671.full.pdf
* 2012_06_07
** PreCR Repair Mix: http://www.neb.com/nebecomm/products/productM0309.asp
** Dr. Zhang used to mention about designing "well-controlled experiment to test whether pre-treatment with this PreCR Repair Mix can improve either BSPP or tagmentation/PCR?"

Revision as of 00:19, 8 June 2012

Link to calendar:[[1]]
Install R packages: install.packages("package_name")
SNP 134 data base : on genome-miner: /media/Ext4T/GenomeDB/HsGenome/snp134_snv.txt
genemapster address: genemapster.dynamic.ucsd.edu
http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm
R:Data structure: http://www.statmethods.net/input/datatypes.html
R: Graphic parameters, text & symbol size, plotting symbols, lines, colors, fonts, margins and graph size:http://www.statmethods.net/advgraphs/parameters.html
R: color chart:http://research.stowers-institute.org/efg/R/Color/Chart/ColorChart.pdf
Multiple testing correction: MultipleTestCorrection_Agilent