Noi:Quicklinks: Difference between revisions

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* Read: (2012_04_23)
* Read: (2012_04_23)
** PCA analysis: http://strata.uga.edu/software/pdf/pcaTutorial.pdf
** PCA analysis: http://strata.uga.edu/software/pdf/pcaTutorial.pdf
** PCA script example: http://stat.ethz.ch/~maathuis/teaching/fall08/Rscript-PCA.R
** Suggestion from Dr. Zhang: http://www.pnas.org/content/early/2012/04/18/1201310109.full.pdf+html
** Suggestion from Dr. Zhang: http://www.pnas.org/content/early/2012/04/18/1201310109.full.pdf+html
* 2012_04_25
* 2012_04_25

Revision as of 01:24, 14 June 2012

Link to calendar:[[1]]
Install R packages: install.packages("package_name")
SNP 134 data base : on genome-miner: /media/Ext4T/GenomeDB/HsGenome/snp134_snv.txt
genemapster address: genemapster.dynamic.ucsd.edu
http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm
R:Data structure: http://www.statmethods.net/input/datatypes.html
R: Graphic parameters, text & symbol size, plotting symbols, lines, colors, fonts, margins and graph size:http://www.statmethods.net/advgraphs/parameters.html
R: color chart:http://research.stowers-institute.org/efg/R/Color/Chart/ColorChart.pdf
Multiple testing correction: MultipleTestCorrection_Agilent