Noi:Quicklinks: Difference between revisions

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  Track: RefSeq Genes
  Track: RefSeq Genes
  Table: RefGenes
  Table: RefGenes
* Dr. Zhang suggest to try '''EZ-96 DNA Methylation-Gold™ MagPrep''' (2012/06/28) : http://www.zymoresearch.com/downloads/dl/file/id/494/d5042i.pdf

Revision as of 18:25, 28 June 2012

Link to calendar:[[1]]
Install R packages: install.packages("package_name")
SNP 134 data base : on genome-miner: /media/Ext4T/GenomeDB/HsGenome/snp134_snv.txt
genemapster address: genemapster.dynamic.ucsd.edu
http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm
R:Data structure: http://www.statmethods.net/input/datatypes.html
R: Graphic parameters, text & symbol size, plotting symbols, lines, colors, fonts, margins and graph size:http://www.statmethods.net/advgraphs/parameters.html
R: color chart:http://research.stowers-institute.org/efg/R/Color/Chart/ColorChart.pdf
Multiple testing correction: MultipleTestCorrection_Agilent

Dinh:COMPUTATIONAL/bisReadMapper: http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh:COMPUTATIONAL/bisReadMapper
BEDtools and Table browser (to get annotated file)

Group: Genes and Gene Prediction Tracks
Track: RefSeq Genes
Table: RefGenes