Noi/NOTES/2012-4-26: Difference between revisions
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* '''Link to calendar''': [[http://genome-tech.ucsd.edu/LabNotes/index.php/noi:DMR220k_LabNotes]] | |||
* Previous analysis of mQTL on UCLA data set: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-11 | |||
* Continued from: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-21 | |||
== mQTL analysis on UCLA-SZ data set (no CpG-SNP) == | == mQTL analysis on UCLA-SZ data set (no CpG-SNP) == | ||
* Details will be filled later | * Details will be filled later |
Revision as of 20:50, 26 April 2012
- Link to calendar: [[1]]
- Previous analysis of mQTL on UCLA data set: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-11
- Continued from: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-21
mQTL analysis on UCLA-SZ data set (no CpG-SNP)
- Details will be filled later
- Note: P-value of 10%FDR is p <= 1.636Eā4
Associated CpG-SNP distance | Number of assiciated CpG-SNP | % |
10%FDR_10kb | 378 | 50.94% |
10%FDR_10-20kb | 27 | 3.64% |
10%FDR_20-30kb | 21 | 2.83% |
10%FDR_30-40kb | 36 | 4.85% |
10%FDR_40-50kb | 2 | 0.27% |
10%FDR_50kb-2Mb | 278 | 37.47% |
Total in 2Mb | 742 |
Associated CpG-SNP distance | Number of assiciated CpG-SNP | % |
minpval0.05_10kb | 862 | 13.43% |
minpval0.05_10-20kb | 124 | 1.93% |
minpval0.05_20-30kb | 133 | 2.07% |
minpval0.05_30-40kb | 108 | 1.68% |
minpval0.05_40-50kb | 75 | 1.17% |
minpval0.05_50kb-2Mb | 5,116 | 79.71% |
Total in 2Mb | 6,418 |