Calendar/2012-7-13: Difference between revisions
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==qPCR with N2 Barcodes== | ==qPCR with N2 Barcodes== | ||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
|- style="font-size:8pt;font-weight:bold" align="center" | |- style="background-color:#FCD5B4;font-size:8pt;font-weight:bold" align="center" | ||
|style=" | |style="text-decoration:underline" width="90" height="15" | DIP Sample | ||
| | | width="65" | N2 Barcode | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
|style="text-decoration:none" height="15" | shCONT-input | |style="text-decoration:none" height="15" | shCONT-input | ||
| align="center" | 1 | | align="center" | 1 | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
| height="15" | shCONT-IgG | | height="15" | shCONT-IgG | ||
| align="center" | 2 | | align="center" | 2 | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
| height="15" | shCONT-5mC | | height="15" | shCONT-5mC | ||
| align="center" | 3 | | align="center" | 3 | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
| height="15" | shCONT-5hmC | | height="15" | shCONT-5hmC | ||
| align="center" | 4 | | align="center" | 4 | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
| height="15" | shCONT-5fc | | height="15" | shCONT-5fc | ||
| align="center" | 5 | | align="center" | 5 | ||
|- style="font-size:8pt" align="center" | |- style="font-size:8pt" align="center" | ||
| height="15" | shCONT-5caC | | height="15" | shCONT-5caC | ||
| align="center" | 6 | | align="center" | 6 | ||
|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-input | |||
| align="center" | 7 | |||
| | |||
| | |||
|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-IgG | |||
| align="center" | 8 | |||
| | |||
| | |||
|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-5mC | |||
| align="center" | 9 | |||
| | |||
| | |||
|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-5hmC | |||
| align="center" | 10 | |||
| | |||
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|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-5fC | |||
| align="center" | 11 | |||
| | |||
| | |||
|- | |- style="font-size:8pt" align="center" | ||
| height="15" | shTDG-caC | |||
| align="center" | 12 | |||
| | |||
| | |||
|} | |} |
Revision as of 01:42, 16 July 2012
Library Construction of Dr. Yi Zhang's DiP libraries Sample
Samples Preparation Protocol from Li
- Received samples from Li on Jul 13 2012, 12 samples total in a yellow box, transfer to -20C
qPCR with N2 Barcodes
DIP Sample | N2 Barcode |
shCONT-input | 1 |
shCONT-IgG | 2 |
shCONT-5mC | 3 |
shCONT-5hmC | 4 |
shCONT-5fc | 5 |
shCONT-5caC | 6 |
shTDG-input | 7 |
shTDG-IgG | 8 |
shTDG-5mC | 9 |
shTDG-5hmC | 10 |
shTDG-5fC | 11 |
shTDG-caC | 12 |
- Add 20ul 10uM N2-bar-code primers into strip tube
- Add 20ul 10uM PCR_F primers and mix
- We have 5uM F+R N2 Ind primer (Store at 4C Alice yellow 0.2ul tube rack)
- Add 10ul template (for low volume sample add 5ul sample and add 5ul h2o) and 1ul barcode primers (using multi channel pipette) to strip tube
- Add 39ul MM to each well
98C 30sec (98C 10sec -> 63C 20sec-> 72C 30sec) x 20 cycles 72C 2min 15C hold.
qPCR Curves
- 120713 1.jpg
Samples taken out after cycle 7
- 120713 2.jpg
sample
- 120713 3.jpg
sample
- 120713 4.jpg
sample
- 120713 5.jpg
sample
Gel quant
- ZhangLab 2 2012-07-15 16hr 20min.jpg
LM N2 Ind 10-12
- ZhangLab 2 2012-07-15 16hr 19min.jpg
LM space N2 Ind 1-9
Qubit
DIP Sample | N2 Barcode | Sample Concentration ng/ul | Volume ul | Amount ng |
shCONT-input | 1 | 3.62 | 30 | 108.6 |
shCONT-IgG | 2 | 2.36 | 30 | 70.8 |
shCONT-5mC | 3 | 2.64 | 30 | 79.2 |
shCONT-5hmC | 4 | 3.54 | 30 | 106.2 |
shCONT-5fc | 5 | 3.58 | 30 | 107.4 |
shCONT-5caC | 6 | 3.82 | 30 | 114.6 |
shTDG-input | 7 | 3.54 | 30 | 106.2 |
shTDG-IgG | 8 | 2.4 | 30 | 72 |
shTDG-5mC | 9 | 3.06 | 30 | 91.8 |
shTDG-5hmC | 10 | 4.04 | 30 | 121.2 |
shTDG-5fC | 11 | 3.9 | 30 | 117 |
shTDG-caC | 12 | 3.18 | 30 | 95.4 |