Daniel:Notebook/HiResChrPaint: Difference between revisions

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[[Daniel Jacobsen|Back to Notebook]]
[[Daniel Jacobsen|Back to Notebook]]
[[Daniel:Experiments-HRCP|Experiment List]]
===2014===
<calendar>
name=Daniel:Notebook/HiResChrPaint
format=%name/%year-%month-%day
date=2014/02/01
view=oneyear
</calendar>
===2013===
<calendar>
<calendar>
name=Daniel:Notebook/HiResChrPaint
name=Daniel:Notebook/HiResChrPaint
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view=oneyear
view=oneyear
</calendar>
</calendar>
==Categories==
<div style="column-count:3;-moz-column-count:3;-webkit-column-count:3">
*[[:Category:Probe Mining]]
*[[:Category:HRCP]]
*[[:Category:Hybridization]]
*[[:Category:ULYSIS Label]]
*[[:Category:Slide Preparation]]
*[[:Category:Size Exclusion]]
*[[:Category:EtOH Precipitation]]
*[[:Category:qPCR]]
*[[:Category:DpnII]]
*[[:Category:Lambda Exo]]
*[[:Category:ARES Label]]
*[[:Category:Microscopy]]
*[[:Category:TBE Gel]]
*[[:Category:USER]]
</div>


==Probe Design==
==Probe Design==
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The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook):
The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook):


                                                                    V6(#probes)  V4(#probes)
                                V6(#probes)  V4(#probes)
   19,518 [[Media:Feb2012_80k_set_1.txt.gz|Feb2012_80k_set_1.txt]]    16559      2959
   19,518 [[Media:Feb2012_80k_set_1.txt.gz|Feb2012_80k_set_1.txt]]    16559      2959
   20,000 [[Media:Feb2012_80k_set_2.txt.gz|Feb2012_80k_set_2.txt]]    16400      3600
   20,000 [[Media:Feb2012_80k_set_2.txt.gz|Feb2012_80k_set_2.txt]]    16400      3600
   18,850 [[Media:Feb2012_80k_set_3.txt.gz|Feb2012_80k_set_3.txt]]    13000      5850
   18,850 [[Media:Feb2012_80k_set_3.txt.gz|Feb2012_80k_set_3.txt]]    13000      5850
   19,301 [[Media:Feb2012_80k_set_4.txt.gz|Feb2012_80k_set_4.txt]]    13314      5987
   19,301 [[Media:Feb2012_80k_set_4.txt.gz|Feb2012_80k_set_4.txt]]    13314      5987
or
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="font-size:12pt" align="center" valign="bottom"
| align="center" width="65" height="15" | &nbsp;
|style="font-weight:bold" width="65" | V6
|style="font-weight:bold" width="65" | V4
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="15" | Set 1
| align="center" | 16559
| align="center" | 2959
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="15" | Set 2
| align="center" | 16400
| align="center" | 3600
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="15" | Set 3
| align="center" | 13000
| align="center" | 5850
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="15" | Set 4
| align="center" | 13314
| align="center" | 5987
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="30" | total probes
| align="center" | 59273
| align="center" | 18396
|- style="font-size:12pt" align="center" valign="bottom"
|style="font-weight:bold" height="60" | total bp (102/probe, in millions)
| align="center" | 6.05
| align="center" | 1.88
|}

Latest revision as of 17:57, 10 September 2014

High Resolution Chromosome Painting Project[edit]

Back to Notebook

Experiment List

2014[edit]

<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar>

2013[edit]

<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar>

Categories[edit]

Probe Design[edit]

For detailed analysis on probe design, see Dr. Zhang's wiki: Probe Design

The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook):

                                V6(#probes)  V4(#probes)
  19,518 Feb2012_80k_set_1.txt     16559       2959
  20,000 Feb2012_80k_set_2.txt     16400       3600
  18,850 Feb2012_80k_set_3.txt     13000       5850
  19,301 Feb2012_80k_set_4.txt     13314       5987

or

  V6 V4
Set 1 16559 2959
Set 2 16400 3600
Set 3 13000 5850
Set 4 13314 5987
total probes 59273 18396
total bp (102/probe, in millions) 6.05 1.88