Daniel:Notebook/HiResChrPaint: Difference between revisions
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[[Daniel Jacobsen|Back to Notebook]] | [[Daniel Jacobsen|Back to Notebook]] | ||
[[Daniel:Experiments-HRCP|Experiment List]] | |||
===2014=== | |||
<calendar> | |||
name=Daniel:Notebook/HiResChrPaint | |||
format=%name/%year-%month-%day | |||
date=2014/02/01 | |||
view=oneyear | |||
</calendar> | |||
===2013=== | |||
<calendar> | <calendar> | ||
name=Daniel:Notebook/HiResChrPaint | name=Daniel:Notebook/HiResChrPaint | ||
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view=oneyear | view=oneyear | ||
</calendar> | </calendar> | ||
==Categories== | |||
<div style="column-count:3;-moz-column-count:3;-webkit-column-count:3"> | |||
*[[:Category:Probe Mining]] | |||
*[[:Category:HRCP]] | |||
*[[:Category:Hybridization]] | |||
*[[:Category:ULYSIS Label]] | |||
*[[:Category:Slide Preparation]] | |||
*[[:Category:Size Exclusion]] | |||
*[[:Category:EtOH Precipitation]] | |||
*[[:Category:qPCR]] | |||
*[[:Category:DpnII]] | |||
*[[:Category:Lambda Exo]] | |||
*[[:Category:ARES Label]] | |||
*[[:Category:Microscopy]] | |||
*[[:Category:TBE Gel]] | |||
*[[:Category:USER]] | |||
</div> | |||
==Probe Design== | ==Probe Design== | ||
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18,850 [[Media:Feb2012_80k_set_3.txt.gz|Feb2012_80k_set_3.txt]] 13000 5850 | 18,850 [[Media:Feb2012_80k_set_3.txt.gz|Feb2012_80k_set_3.txt]] 13000 5850 | ||
19,301 [[Media:Feb2012_80k_set_4.txt.gz|Feb2012_80k_set_4.txt]] 13314 5987 | 19,301 [[Media:Feb2012_80k_set_4.txt.gz|Feb2012_80k_set_4.txt]] 13314 5987 | ||
or | |||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
| align="center" width="65" height="15" | | |||
|style="font-weight:bold" width="65" | V6 | |||
|style="font-weight:bold" width="65" | V4 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="15" | Set 1 | |||
| align="center" | 16559 | |||
| align="center" | 2959 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="15" | Set 2 | |||
| align="center" | 16400 | |||
| align="center" | 3600 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="15" | Set 3 | |||
| align="center" | 13000 | |||
| align="center" | 5850 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="15" | Set 4 | |||
| align="center" | 13314 | |||
| align="center" | 5987 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="30" | total probes | |||
| align="center" | 59273 | |||
| align="center" | 18396 | |||
|- style="font-size:12pt" align="center" valign="bottom" | |||
|style="font-weight:bold" height="60" | total bp (102/probe, in millions) | |||
| align="center" | 6.05 | |||
| align="center" | 1.88 | |||
|} |
Latest revision as of 17:57, 10 September 2014
High Resolution Chromosome Painting Project[edit]
2014[edit]
<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar>
2013[edit]
<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar>
Categories[edit]
Probe Design[edit]
For detailed analysis on probe design, see Dr. Zhang's wiki: Probe Design
The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook):
V6(#probes) V4(#probes) 19,518 Feb2012_80k_set_1.txt 16559 2959 20,000 Feb2012_80k_set_2.txt 16400 3600 18,850 Feb2012_80k_set_3.txt 13000 5850 19,301 Feb2012_80k_set_4.txt 13314 5987
or
V6 | V4 | |
Set 1 | 16559 | 2959 |
Set 2 | 16400 | 3600 |
Set 3 | 13000 | 5850 |
Set 4 | 13314 | 5987 |
total probes | 59273 | 18396 |
total bp (102/probe, in millions) | 6.05 | 1.88 |