Daniel:Notebook/HiResChrPaint: Difference between revisions

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[[Daniel Jacobsen|Back to Notebook]]
[[Daniel Jacobsen|Back to Notebook]]
[[Daniel:Experiments-HRCP|Experiment List]]


===2014===
===2014===
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==Categories==
==Categories==


[[Daniel:Experiments-HRCP|Experiment List]]
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*[[:Category:Probe Mining]]
*[[:Category:Probe Mining]]
*[[:Category:HRCP]]
*[[:Category:Hybridization]]
*[[:Category:ULYSIS Label]]
*[[:Category:Slide Preparation]]
*[[:Category:Size Exclusion]]
*[[:Category:EtOH Precipitation]]
*[[:Category:qPCR]]
*[[:Category:DpnII]]
*[[:Category:Lambda Exo]]
*[[:Category:ARES Label]]
*[[:Category:Microscopy]]
*[[:Category:TBE Gel]]
*[[:Category:USER]]
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Latest revision as of 17:57, 10 September 2014

High Resolution Chromosome Painting Project[edit]

Back to Notebook

Experiment List

2014[edit]

<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar>

2013[edit]

<calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar>

Categories[edit]

Probe Design[edit]

For detailed analysis on probe design, see Dr. Zhang's wiki: Probe Design

The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook):

                                V6(#probes)  V4(#probes)
  19,518 Feb2012_80k_set_1.txt     16559       2959
  20,000 Feb2012_80k_set_2.txt     16400       3600
  18,850 Feb2012_80k_set_3.txt     13000       5850
  19,301 Feb2012_80k_set_4.txt     13314       5987

or

  V6 V4
Set 1 16559 2959
Set 2 16400 3600
Set 3 13000 5850
Set 4 13314 5987
total probes 59273 18396
total bp (102/probe, in millions) 6.05 1.88