Matt:LabNotes/2013-5-10: Difference between revisions
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>Mzcai (Created page with "==Agilent Probe Prep== *Dr. Zhang resuspended probes to 20nM *Dr. Zhang aliquoted Agilent probes into separate tube labelled "FISHYB V1 probes 5/07/13" ===Probe Expansion PCR...") |
>Mzcai |
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===Probe Expansion PCR=== | ===Probe Expansion PCR=== | ||
Expansion PCR in 2 tubes of | Expansion PCR in 2 tubes of 180ul total (1 tube for 0bp gap probes with AP1V6 primers; 1 tube for 20bp gap probes with AP1V4 primers) <br> | ||
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94C 2min -> (94C 30sec -> 54C 45sec -> 72C 45sec) x | *NOTE: Mixed thoroughly and then removed 20ul so there would be room to close lid | ||
94C 2min -> (94C 30sec -> 54C 45sec -> 72C 45sec) x 14 -> 72C 3min -> 15C hold | |||
*Stopped after 12 cycles |
Revision as of 00:18, 11 May 2013
Agilent Probe Prep
- Dr. Zhang resuspended probes to 20nM
- Dr. Zhang aliquoted Agilent probes into separate tube labelled "FISHYB V1 probes 5/07/13"
Probe Expansion PCR
Expansion PCR in 2 tubes of 180ul total (1 tube for 0bp gap probes with AP1V6 primers; 1 tube for 20bp gap probes with AP1V4 primers)
' | 0 gap probes (ul) | 20 gap probes (ul) |
Agi26k (20nM) | 10 | 10 |
2x Kapa SYBG qPCR MM | 100 | 100 |
100uM pAP1V6U | 0.8 | 0 |
100uM AP2V6 | 0.8 | 0 |
100uM pAP1V4U | 0 | 0.8 |
100uM AP2V4 | 0 | 0.8 |
H2O | 88.4 | 88.4 |
Total | 200 | 200 |
- NOTE: Mixed thoroughly and then removed 20ul so there would be room to close lid
94C 2min -> (94C 30sec -> 54C 45sec -> 72C 45sec) x 14 -> 72C 3min -> 15C hold
- Stopped after 12 cycles