Daniel:Notebook/GenomeMiner: Difference between revisions

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Line 16: Line 16:
  %% scp <remote user>@<remote machine>:<remote path> <local file>
  %% scp <remote user>@<remote machine>:<remote path> <local file>
  scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv
  scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv
==HL155==
Analysis of 3 probe production companies: MYcroarray, Agilent, and Custom Array.
'''Comparing errors per 100 bp'''
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="font-size:12pt"
| align="center" width="65" height="30"  valign="bottom" | &nbsp;
|style="font-weight:bold" width="108" align="center" | Insertions/Deletions (/100 bp)
|style="font-weight:bold" width="91" align="center" | Substitutions (/100 bp)
|- style="font-size:12pt"
|style="font-weight:bold" height="30"  valign="bottom" | Mycroarray
| align="center" align="center" valign="bottom" | 1.20
| align="center" align="center" valign="bottom" | 0.74
|- style="font-size:12pt"
|style="font-weight:bold" height="15"  valign="bottom" | Agilent
| align="center" align="center" valign="bottom" | 0.08
| align="center" align="center" valign="bottom" | 0.48
|- style="font-size:12pt"
|style="font-weight:bold" height="30"  valign="bottom" | Custom Array 12K
| align="center" align="center" valign="bottom" | 0.05
| align="center" align="center" valign="bottom" | 0.60
|}

Revision as of 00:00, 14 August 2013

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Link to useful Perl website: Basic Perl

<calendar> name=Daniel:Notebook/GenomeMiner format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar>

Useful Linux Commands

SCP to laptop

%% scp <remote user>@<remote machine>:<remote path> <local file>
scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv

HL155

Analysis of 3 probe production companies: MYcroarray, Agilent, and Custom Array.

Comparing errors per 100 bp

  Insertions/Deletions (/100 bp) Substitutions (/100 bp)
Mycroarray 1.20 0.74
Agilent 0.08 0.48
Custom Array 12K 0.05 0.60