Daniel:Notebook/GenomeMiner: Difference between revisions
Jump to navigation
Jump to search
>Djacobse No edit summary |
>Djacobse No edit summary |
||
Line 16: | Line 16: | ||
%% scp <remote user>@<remote machine>:<remote path> <local file> | %% scp <remote user>@<remote machine>:<remote path> <local file> | ||
scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv | scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv | ||
==HL155== | |||
Analysis of 3 probe production companies: MYcroarray, Agilent, and Custom Array. | |||
'''Comparing errors per 100 bp''' | |||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="font-size:12pt" | |||
| align="center" width="65" height="30" valign="bottom" | | |||
|style="font-weight:bold" width="108" align="center" | Insertions/Deletions (/100 bp) | |||
|style="font-weight:bold" width="91" align="center" | Substitutions (/100 bp) | |||
|- style="font-size:12pt" | |||
|style="font-weight:bold" height="30" valign="bottom" | Mycroarray | |||
| align="center" align="center" valign="bottom" | 1.20 | |||
| align="center" align="center" valign="bottom" | 0.74 | |||
|- style="font-size:12pt" | |||
|style="font-weight:bold" height="15" valign="bottom" | Agilent | |||
| align="center" align="center" valign="bottom" | 0.08 | |||
| align="center" align="center" valign="bottom" | 0.48 | |||
|- style="font-size:12pt" | |||
|style="font-weight:bold" height="30" valign="bottom" | Custom Array 12K | |||
| align="center" align="center" valign="bottom" | 0.05 | |||
| align="center" align="center" valign="bottom" | 0.60 | |||
|} |
Revision as of 00:00, 14 August 2013
Link to useful Perl website: Basic Perl
<calendar> name=Daniel:Notebook/GenomeMiner format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar>
Useful Linux Commands
SCP to laptop
%% scp <remote user>@<remote machine>:<remote path> <local file> scp djacobse@132.239.135.41:/home/djacobse/HL155/130628_HL155/probecount.csv probecount.csv
HL155
Analysis of 3 probe production companies: MYcroarray, Agilent, and Custom Array.
Comparing errors per 100 bp
Insertions/Deletions (/100 bp) | Substitutions (/100 bp) | |
Mycroarray | 1.20 | 0.74 |
Agilent | 0.08 | 0.48 |
Custom Array 12K | 0.05 | 0.60 |