Daniel:Notebook/GenomeMiner/2013-8-13: Difference between revisions

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Continuing Matt's pipeline.  Looking over the perl script.
Continuing Matt's pipeline.  Looking over the perl script.


I believe I fixed the perl script:  [[File:]]
I believe I fixed the perl script (uses my notation):  [[File:Count_mismatch.txt]]


===Results===
===Results===

Revision as of 18:04, 13 August 2013

HL155

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Continuing Matt's pipeline. Looking over the perl script.

I believe I fixed the perl script (uses my notation): File:Count mismatch.txt

Results

Error Rate: 0.0208727984165367

  Total reads Filtered reads Perfect match 1 ins/del 1 sub 2 ins/del 2 sub 1 ins/del & 1 sub 3+
Number 20727275 15082383 4411040 3584377 2417322 1893421 754110 1647242 374871
Percent 100 72.77 21.28 17.29 11.66 9.13 3.64 7.95 1.81