Daniel:Notebook/GenomeMiner/2013-8-27: Difference between revisions

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==Running Bowtie2 with Phred 64==
==Running Bowtie2 with Phred 64==


Running bowtie2 again with phred 64 to start the pipeline again.  Tried [[Daniel:Notebook/GenomeMiner/2013-8-20|last week]] but it didn't go so well.  I got an error.  So I'm running the program again.
Running bowtie2 again with phred 64 to start the pipeline again.  Tried [[Daniel:Notebook/GenomeMiner/2013-8-19|last week]] but it didn't go so well.  I got an error.  So I'm running the program again.


'''Bowtie2 with Phred 64'''
'''Bowtie2 with Phred 64'''
bowtie2 -x hrcp_probesequences -U 
s_2_1_Indx12.txt,s_2_1_Indx53.txt,s_2_1_Indx54.txt,s_2_1_Indx04.txt,s_2_1_Indx03.txt,s_2_1_Indx05.txt_2_1_Indx02.txt,
s_2_1_Indx13.txt,s_2_1_Indx01.txt,s_2_1_Indx55.txt,s_2_1_Indx49.txt,s_3_1_Indx11.txt,s_3_1_Indx10.txt,s_2_1_Indx56.txt,
s_2_1_Indx52.txt,s_3_1_Indx12.txt,s_2_1_Indx11.txt,s_2_1_Indx50.txt --phred64 -S hrcp_fullindex_samout_p64.out

Revision as of 17:53, 27 August 2013

HL155

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Running Bowtie2 with Phred 64

Running bowtie2 again with phred 64 to start the pipeline again. Tried last week but it didn't go so well. I got an error. So I'm running the program again.

Bowtie2 with Phred 64

bowtie2 -x hrcp_probesequences -U  
s_2_1_Indx12.txt,s_2_1_Indx53.txt,s_2_1_Indx54.txt,s_2_1_Indx04.txt,s_2_1_Indx03.txt,s_2_1_Indx05.txt_2_1_Indx02.txt,
s_2_1_Indx13.txt,s_2_1_Indx01.txt,s_2_1_Indx55.txt,s_2_1_Indx49.txt,s_3_1_Indx11.txt,s_3_1_Indx10.txt,s_2_1_Indx56.txt,
s_2_1_Indx52.txt,s_3_1_Indx12.txt,s_2_1_Indx11.txt,s_2_1_Indx50.txt --phred64 -S hrcp_fullindex_samout_p64.out