Daniel:Notebook/GenomeMiner/2013-8-27: Difference between revisions
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==Running Bowtie2 with Phred 64== | ==Running Bowtie2 with Phred 64== | ||
Running bowtie2 again with phred 64 to start the pipeline again. Tried [[Daniel:Notebook/GenomeMiner/2013-8- | Running bowtie2 again with phred 64 to start the pipeline again. Tried [[Daniel:Notebook/GenomeMiner/2013-8-19|last week]] but it didn't go so well. I got an error. So I'm running the program again. | ||
'''Bowtie2 with Phred 64''' | '''Bowtie2 with Phred 64''' | ||
bowtie2 -x hrcp_probesequences -U | |||
s_2_1_Indx12.txt,s_2_1_Indx53.txt,s_2_1_Indx54.txt,s_2_1_Indx04.txt,s_2_1_Indx03.txt,s_2_1_Indx05.txt_2_1_Indx02.txt, | |||
s_2_1_Indx13.txt,s_2_1_Indx01.txt,s_2_1_Indx55.txt,s_2_1_Indx49.txt,s_3_1_Indx11.txt,s_3_1_Indx10.txt,s_2_1_Indx56.txt, | |||
s_2_1_Indx52.txt,s_3_1_Indx12.txt,s_2_1_Indx11.txt,s_2_1_Indx50.txt --phred64 -S hrcp_fullindex_samout_p64.out |
Revision as of 17:53, 27 August 2013
HL155
Running Bowtie2 with Phred 64
Running bowtie2 again with phred 64 to start the pipeline again. Tried last week but it didn't go so well. I got an error. So I'm running the program again.
Bowtie2 with Phred 64
bowtie2 -x hrcp_probesequences -U s_2_1_Indx12.txt,s_2_1_Indx53.txt,s_2_1_Indx54.txt,s_2_1_Indx04.txt,s_2_1_Indx03.txt,s_2_1_Indx05.txt_2_1_Indx02.txt, s_2_1_Indx13.txt,s_2_1_Indx01.txt,s_2_1_Indx55.txt,s_2_1_Indx49.txt,s_3_1_Indx11.txt,s_3_1_Indx10.txt,s_2_1_Indx56.txt, s_2_1_Indx52.txt,s_3_1_Indx12.txt,s_2_1_Indx11.txt,s_2_1_Indx50.txt --phred64 -S hrcp_fullindex_samout_p64.out