Daniel:Notebook/GenomeMiner/2013-8-28: Difference between revisions
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'''Perl Script to Count Total Probe Number''' | '''Perl Script to Count Total Probe Number''' | ||
perl probecount.plx > probecount_idx10to13.txt |
Revision as of 18:11, 28 August 2013
HL155
Slim Indexing Analysis
Counted Errors Using Modified Perl Script from Matt
Script:
Raw Error Counts
Error Percentages
Mycroarray Slim Error % | |
Error Rate | 2.03106318468037 |
Insertions | 0.10772186493141 |
Deletions | 1.17707730956392 |
Substitutions | 0.746264010185034 |
Counting Results From Index 10-13
Print Only 3rd Column
awk '{print $3}' hrcp_sortfilt_slimindex_eq.sam > readlist.txt
Perl Script to Count Total Probe Number
perl probecount.plx > probecount_idx10to13.txt