Daniel:Notebook/GenomeMiner/2013-8-28: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Djacobse
No edit summary
>Djacobse
Line 5: Line 5:
'''Counted Errors Using Modified Perl Script from Matt'''
'''Counted Errors Using Modified Perl Script from Matt'''


Script:  
Script: [[File:Imp_count_mismatch.txt]]


'''Raw Error Counts'''
'''Raw Error Counts'''

Revision as of 18:19, 28 August 2013

HL155

Slim Indexing Analysis

Counted Errors Using Modified Perl Script from Matt

Script: File:Imp count mismatch.txt

Raw Error Counts


Error Percentages

  Mycroarray Slim Error %
Error Rate 2.03106318468037
Insertions 0.10772186493141
Deletions 1.17707730956392
Substitutions 0.746264010185034

Counting Results From Index 10-13

Print Only 3rd Column

awk '{print $3}' hrcp_sortfilt_slimindex_eq.sam > readlist.txt

Perl Script to Count Total Probe Number

perl probecount.plx > probecount_idx10to13.txt