Daniel:Notebook/GenomeMiner/2013-8-28: Difference between revisions

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[[Daniel:Notebook/GenomeMiner|Back to Calendar]]


==Slim Indexing Analysis==
==Slim Indexing Analysis==

Revision as of 18:24, 28 August 2013

HL155

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Slim Indexing Analysis

Counted Errors Using Modified Perl Script from Matt

Script: File:Imp count mismatch.txt

Raw Error Counts


Error Percentages

  Mycroarray Slim Error %
Error Rate 2.03106318468037
Insertions 0.10772186493141
Deletions 1.17707730956392
Substitutions 0.746264010185034

Counting Results From Index 10-13

Print Only 3rd Column

awk '{print $3}' hrcp_sortfilt_slimindex_eq.sam > readlist.txt

Perl Script to Count Total Probe Number

perl probecount.plx > probecount_idx10to13.txt