Daniel:Notebook/GenomeMiner/2013-9-3: Difference between revisions
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===Updated Error Comparison=== | |||
[[Image:AgilentMYCA_ErrorComp090313.png|600px]] | |||
So now MYcroarray is still the worst of the three companies, but does not have nearly as bad of error. |
Revision as of 21:00, 3 September 2013
HL155
Matt discovered that the MYcroarray probe set may not be aligning well due because we should be aligning to the reverse complement of the probe sequences we've been using. As such, Matt did the analysis, and the results changed fairly dramatically.
V4S1 | V4S2 | V4S3 | V4S4 | V6S1 | V6S2 | V6S3 | V6S4 | Weighted Average (%) | |
Overall Error Rate | 1.33% | 1.32% | 1.32% | 1.19% | 1.17% | 1.13% | 1.18% | 1.15% | 1.19 |
Insertions | 0.26% | 0.21% | 0.24% | 0.24% | 0.19% | 0.18% | 0.19% | 0.21% | 0.20 |
Deletions | 0.05% | 0.04% | 0.04% | 0.05% | 0.04% | 0.04% | 0.04% | 0.05% | 0.04 |
Substitutions | 1.01% | 1.07% | 1.04% | 0.90% | 0.94% | 0.91% | 0.95% | 0.89% | 0.94 |
Number of Probes | 2959 | 3600 | 5850 | 5987 | 16559 | 16400 | 13000 | 13314 |
Updated Error Comparison
File:AgilentMYCA ErrorComp090313.png
So now MYcroarray is still the worst of the three companies, but does not have nearly as bad of error.