Daniel:Notebook/GenomeMiner/2013-9-20: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Djacobse
>Djacobse
Line 13: Line 13:
  3. ./hl155bash.sh
  3. ./hl155bash.sh
  4. perl imp_count_mismatch.plx
  4. perl imp_count_mismatch.plx
===Matlab Error Counts===
627618 substitutions (0.42 pct)
161680 insertions (0.11 pct)
30992 deletions (0.02 pct)
===Alignment Results===

Revision as of 19:33, 20 September 2013

Mock HL155 (Started 9/9/2013)

Back to Calendar

Mimic Data, Bases 30 to 50

Last mimic data bases 30 to 50 actually put insertions/deletions from bases 1 to 29, not 30 to 50, so for good measure I'm repeating the code using the correct 30 to 50 range. This will make it directly comparable to the perfect base quality mimic data from 9/18.

Workflow

1. MockHL155_Master.m, Switch 5
2. scp v4s1mockseq_errormimic_30to50bp.fq djacobse@132.239.135.41:/media/LTS_15T/DEJ_LTS/SeqStore/130628_HL155/mockseq/errormimic_30to50/
3. ./hl155bash.sh
4. perl imp_count_mismatch.plx

Matlab Error Counts

627618 substitutions (0.42 pct) 
161680 insertions (0.11 pct) 
30992 deletions (0.02 pct) 

Alignment Results