Daniel:Notebook/GenomeMiner/2013-9-25: Difference between revisions

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'''Left''': Uses full length reference file; '''Right''': uses shortened reference files


==Retrospective==
==Retrospective==


Given what we know now (that deletions are seriously undercounted using shortened reference files)
Given what we know now (that deletions are seriously undercounted using shortened reference files)

Revision as of 20:30, 25 September 2013

Mock HL155 (Started 9/9/2013)

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Mimic Data Using Short Reference (BWA)

Error Counting Results

Error Rate: 1.177%
Error Rate of Insertions: 0.195%
Error Rate of Deletions: 1.42e-06%
Error Rate of Substitutions: 0.982%

Overview of Recent Results

Comparing Real Data

File:ProbeComparison Improved.png|File:AgilentMYCA ErrorComp090313.png


Left: Uses full length reference file; Right: uses shortened reference files

Retrospective

Given what we know now (that deletions are seriously undercounted using shortened reference files)