Kun:LabNotes/CpgSeq/2013-11-24: Difference between revisions

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**PANC_GBM_DMS: [[Media:targetFile_PANC_GBM_DMS.txt|Target list]]
**PANC_GBM_DMS: [[Media:targetFile_PANC_GBM_DMS.txt|Target list]]
***Set I: gap size = 400-450bp, flanking len = 250bp; [[Media:PANC_GBM_DMS_400bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V6.txt|probe assembly script V6]] = [[Media:PANC_GBM_DMS_400bp_probes.txt|Probe sequences]]: 3,514 probes
***Set I: gap size = 400-450bp, flanking len = 250bp; [[Media:PANC_GBM_DMS_400bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V6.txt|probe assembly script V6]] = [[Media:PANC_GBM_DMS_400bp_probes.txt|Probe sequences]]: 3,514 probes
***Set II: gap size = 125-175bp, flanking len = 125bp; [[Media:PANC_GBM_DMS_150bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V4.txt|probe assembly script V4]] = [[Media:PANC_GBM_DMS_1505bp_probes.txt|Probe sequences]].
***Set II: gap size = 125-175bp, flanking len = 125bp; [[Media:PANC_GBM_DMS_150bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V4.txt|probe assembly script V4]] = [[Media:PANC_GBM_DMS_1505bp_probes.txt|Probe sequences]]: 6,960 probes
**CRC_DMS: [[Media:targetFile_CRC_DMS.txt]]: 6,960 probes
**CRC_DMS: [[Media:targetFile_CRC_DMS.txt]].
***Set I: gap size = 400-450bp, flanking len = 300bp; [[Media:CRC_DMS_400bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V6.txt|probe assembly script V6]] = [[Media:CRC_DMS_400bp_probes.txt|Probe sequences]]: 148 probes
***Set I: gap size = 400-450bp, flanking len = 300bp; [[Media:CRC_DMS_400bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V6.txt|probe assembly script V6]] = [[Media:CRC_DMS_400bp_probes.txt|Probe sequences]]: 148 probes
***Set II: gap size = 125-175bp, flanking len = 175bp; [[Media:CRC_150bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V4.txt|probe assembly script V4]] = [[Media:CRC_DMS_1505bp_probes.txt|Probe sequences]]: 149 probes
***Set II: gap size = 125-175bp, flanking len = 175bp; [[Media:CRC_150bp_out.txt|ppDesigner Output]] +  [[Media:probe2padlockCpgLibNov13V4.txt|probe assembly script V4]] = [[Media:CRC_DMS_1505bp_probes.txt|Probe sequences]]: 149 probes

Revision as of 20:39, 24 November 2013

Probe design for the NICE project