Kun:LabNotes/MONOD: Difference between revisions

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==Optimization thread==
*[[Kun:LabNotes/MONOD/2013-11-22|Round 1]]: GBM/PC (short and long inserts, N6 UMI)
*[[Kun:LabNotes/MONOD/2014-1-17|Round 2]]: GBM/PC + placenta (short inserts, N8 UMI)
*[[Kun:LabNotes/MONOD/2014-3-18|Round 3]]: GBM/PC/LC + placenta (short inserts, N8 UMI, non-repetitive)
*[[Kun:LabNotes/MONOD/2014-5-12|Round 4]]: selecting the best probes from Round 1&3
*[[Kun:LabNotes/MONOD/2014-8-4|Round 5]]: screening of all Blood LMS clusters
*[[Kun:LabNotes/MONOD/2015-7-16|Round 6]]: Selected probes from Round 1&3, plus additional targets from different sources.
==Summary of data==
*BSPP
#Round 1: [[Kun:LabNotes/MONOD/2013-11-22]]
#Round 2: [[Kun:LabNotes/MONOD/2014-1-17]]
#Round 3: [[Kun:LabNotes/MONOD/2014-3-18]], [[Kun:LabNotes/MONOD/2014-5-13]]
#Round 4(aka V1N3): [[Kun:LabNotes/MONOD/2014-5-12]], [[Kun:LabNotes/MONOD/2014-6-16]]
#Round 5: [[Kun:LabNotes/MONOD/2014-8-4]]
#Round 6: [[Kun:LabNotes/MONOD/2015-7-16]], [[Kun:LabNotes/MONOD/2014-10-1]]
*RRBS
#[[Kun:LabNotes/MONOD/2014-7-6]]
#[[Kun:LabNotes/MONOD/2014-8-12]]
*Nimblegen capture
#Target selection: [[Kun:LabNotes/MONOD/2014-8-27]]
#[[Kun:LabNotes/MONOD/2014-11-22]]
#[[Kun:LabNotes/MONOD/2015-1-9]]
#[[Kun:LabNotes/MONOD/2015-3-4]]
#[[Kun:LabNotes/MONOD/2015-3-11]]
#[[Kun:LabNotes/MONOD/2015-7-6]]
==Daily notes==
2015
<calendar>
name=Kun:LabNotes/MONOD
format=%name/%year-%month-%day
date=2015/10/01
</calendar>
2014
2014
<calendar>
<calendar>

Latest revision as of 21:53, 23 February 2017

Optimization thread[edit]

  • Round 1: GBM/PC (short and long inserts, N6 UMI)
  • Round 2: GBM/PC + placenta (short inserts, N8 UMI)
  • Round 3: GBM/PC/LC + placenta (short inserts, N8 UMI, non-repetitive)
  • Round 4: selecting the best probes from Round 1&3
  • Round 5: screening of all Blood LMS clusters
  • Round 6: Selected probes from Round 1&3, plus additional targets from different sources.

Summary of data[edit]

  • BSPP
  1. Round 1: Kun:LabNotes/MONOD/2013-11-22
  2. Round 2: Kun:LabNotes/MONOD/2014-1-17
  3. Round 3: Kun:LabNotes/MONOD/2014-3-18, Kun:LabNotes/MONOD/2014-5-13
  4. Round 4(aka V1N3): Kun:LabNotes/MONOD/2014-5-12, Kun:LabNotes/MONOD/2014-6-16
  5. Round 5: Kun:LabNotes/MONOD/2014-8-4
  6. Round 6: Kun:LabNotes/MONOD/2015-7-16, Kun:LabNotes/MONOD/2014-10-1
  • RRBS
  1. Kun:LabNotes/MONOD/2014-7-6
  2. Kun:LabNotes/MONOD/2014-8-12
  • Nimblegen capture
  1. Target selection: Kun:LabNotes/MONOD/2014-8-27
  2. Kun:LabNotes/MONOD/2014-11-22
  3. Kun:LabNotes/MONOD/2015-1-9
  4. Kun:LabNotes/MONOD/2015-3-4
  5. Kun:LabNotes/MONOD/2015-3-11
  1. Kun:LabNotes/MONOD/2015-7-6

Daily notes[edit]

2015 <calendar> name=Kun:LabNotes/MONOD format=%name/%year-%month-%day date=2015/10/01 </calendar>

2014 <calendar> name=Kun:LabNotes/MONOD format=%name/%year-%month-%day date=2014/10/01 </calendar>

2013 <calendar> name=Kun:LabNotes/MONOD format=%name/%year-%month-%day date=2013/10/01 </calendar>