Daniel:Notebook/HiResChrPaint/2014-6-24: Difference between revisions

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Well, it started [[Daniel:Notebook/HiResChrPaint/2014-6-20|Friday]], but at some point over the weekend my probe mining finished.  There are 2 GB of 60 bp oligos, amounting to approximately 40k potential sequences.  Now I should be able to run Oligopaints scripts on them in order to generate probe files of the desired sequences/properties.
Well, it started [[Daniel:Notebook/HiResChrPaint/2014-6-20|Friday]], but at some point over the weekend my probe mining finished.  There are 2 GB of 60 bp oligos, amounting to approximately 40k potential sequences.  Now I should be able to run Oligopaints scripts on them in order to generate probe files of the desired sequences/properties.
#Clean oligo.txt file to make it into a bed file
##python ../../Probe_Design/bin/clean_file.py

Revision as of 22:24, 24 June 2014

Probe Design (Started 06/17/2014)

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Probe Mining

Well, it started Friday, but at some point over the weekend my probe mining finished. There are 2 GB of 60 bp oligos, amounting to approximately 40k potential sequences. Now I should be able to run Oligopaints scripts on them in order to generate probe files of the desired sequences/properties.

  1. Clean oligo.txt file to make it into a bed file
    1. python ../../Probe_Design/bin/clean_file.py