Noi/NOTES/2014-7-2: Difference between revisions

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| align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index'''
| align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Inout DNA amount (ng)'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Input DNA amount (ng)'''
| align="center" style="background:#f0f0f0;"|'''Note'''
| align="center" style="background:#f0f0f0;"|'''Note'''
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Revision as of 22:42, 2 July 2014

Summary of samples and their corresponding index in HiSeq Rapid run data (HiSeq 140627_SN1001)

Original Library name Combined library name (for sequencing) Sample ID TruSeq Index Rapid run lane# Input DNA amount (ng) Note
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-frozen 5ng_1 9 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-frozen 5ng_2 10 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-FFPE 5ng_1 11 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-FFPE 5ng_2 13 2 5 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-frozen-100ng_1 18 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-frozen-100ng_2 19 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-FFPE-100ng_1 20 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-FFPE-100ng_2 21 2 100 Sample from Biochain
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-1_1 1 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-1_2 2 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-2_1 4 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-2_2 5 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-4_1 6 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-4_2 7 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-6_1 8 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-6_2 12 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-C-7_1 14 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-C-7_2 15 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-1 1 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-2 2 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-3 4 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-4 5 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-5 6 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-6 7 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-7 8 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 PC-P-10 12 2 1 Plasma from UCSD-004 project
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 NC-P-2 14 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 NC-P-3 15 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 NC-P-5 16 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_PCT_20140625 NC-P-6 27 2 1 Normal control plasma from Kang Zhang's lab

Summary of samples and their corresponding index in MiSeq run (MiSeq140630)

Original Library name Sample ID TruSeq Index Input DNA amount (ng) Note
NP-RRBS-PC-P-1ng-p2-Jun20 PC-P-8 10 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p2-Jun20 PC-P-9 11 1 Plasma from UCSD-004 project
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-1 13 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-7 18 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-8 19 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-9 20 1 Normal control plasma from Kang Zhang's lab
  • UCSD-004 project: Pancreatic cancer samples
  • CTT: Colon tumor tissue
  • PC = Pancreatic cancer
  • T: Tissue
  • P: Plasma