Noi/NOTES/2014-7-2: Difference between revisions
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= Summary of HiSeq Rapid run | = Summary of samples and their corresponding index = | ||
[[noi:DMR220k_LabNotes#2014| '''Calendar''']] | |||
== HiSeq Rapid run (HiSeq 140627_SN1001) == | |||
* PE 100+7 | |||
* [[Noi/NOTES/2014-6-3|NP-RRBS-CTT-5ng, Jun3]] | |||
* [[Noi/NOTES/2014-6-13|NP-RRBS-CTT-100ng, Jun13]] | |||
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p1-Jun20]] | |||
* [[Noi/NOTES/2014-6-20||NP-RRBS-NC-P-1ng-p1-Jun20]] | |||
{| {{table}} class = wikitable | {| {{table}} class = wikitable | ||
| align="center" style="width: | | align="center" style="width:200px;background:#f0f0f0;"|'''Original Library ID''' | ||
| align="center" style="width: | | align="center" style="width:140px;background:#f0f0f0;"|'''Combined library ID (for sequencing)''' | ||
| align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID''' | | align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID''' | ||
| align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index''' | | align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index''' | ||
| align="center" style="width:60px;background:#f0f0f0;"|'''Rapid run lane#''' | | align="center" style="width:60px;background:#f0f0f0;"|'''Rapid run lane#''' | ||
| align="center" style="width:60px;background:#f0f0f0;"|''' | | align="center" style="width:60px;background:#f0f0f0;"|'''Input DNA amount (ng)''' | ||
| align="center" style="background:#f0f0f0;"|'''Note''' | | align="center" style="width:200px;background:#f0f0f0;"|'''Note''' | ||
|- | |- | ||
| NP-RRBS-CTT-5ng, Jun3||NP_RRBS_CTT_P_20140625||CTT-frozen 5ng_1||9||2||5||Sample from Biochain | | NP-RRBS-CTT-5ng, Jun3||NP_RRBS_CTT_P_20140625||CTT-frozen 5ng_1||9||2||5||Sample from Biochain | ||
Line 45: | Line 52: | ||
| NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC-T-6_2||12||1||100||Solid tumor tissue from UCSD-004 project | | NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC-T-6_2||12||1||100||Solid tumor tissue from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC- | | NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC-T-7_1||14||1||100||Solid tumor tissue from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC- | | NP-RRBS-PCT-100ng-Jun16||NP_RRBS_PCT_20140625||PC-T-7_2||15||1||100||Solid tumor tissue from UCSD-004 project | ||
|- | |- | ||
| |||||||||||| | | |||||||||||| | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-1||1||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-2||2||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-3||4||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-4||5||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-5||6||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-6||7||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-7||8||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p1-Jun20|| | | NP-RRBS-PC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||PC-P-10||12||2||1||Plasma from UCSD-004 project | ||
|- | |- | ||
| |||||||||||| | | |||||||||||| | ||
|- | |- | ||
| NP-RRBS-NC-P-1ng-p1-Jun20|| | | NP-RRBS-NC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||NC-P-2||14||2||1||Normal control plasma from Kang Zhang's lab | ||
|- | |- | ||
| NP-RRBS-NC-P-1ng-p1-Jun20|| | | NP-RRBS-NC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||NC-P-3||15||2||1||Normal control plasma from Kang Zhang's lab | ||
|- | |- | ||
| NP-RRBS-NC-P-1ng-p1-Jun20|| | | NP-RRBS-NC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||NC-P-5||16||2||1||Normal control plasma from Kang Zhang's lab | ||
|- | |- | ||
| NP-RRBS-NC-P-1ng-p1-Jun20|| | | NP-RRBS-NC-P-1ng-p1-Jun20||NP_RRBS_CTT_P_20140625||NC-P-6||27||2||1||Normal control plasma from Kang Zhang's lab | ||
|} | |} | ||
= | |||
== MiSeq run (MiSeq140630) == | |||
* PE 150+7 | |||
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p2-Jun20]] | |||
* [[Noi/NOTES/2014-6-20|NP-RRBS-NC-P-1ng-p2-Jun20]] | |||
{| {{table}} class = wikitable | {| {{table}} class = wikitable | ||
| align="center" style="width: | | align="center" style="width:200px;background:#f0f0f0;"|'''Original Library ID''' | ||
| align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID''' | | align="center" style="width:140px;background:#f0f0f0;"|'''Sample ID''' | ||
| align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index''' | | align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index''' | ||
| align="center" style="width:60px;background:#f0f0f0;"|''' | | align="center" style="width:60px;background:#f0f0f0;"|'''Input DNA amount (ng)''' | ||
| align="center" style="background:#f0f0f0;"|'''Note''' | | align="center" style="width:200px;background:#f0f0f0;"|'''Note''' | ||
|- | |- | ||
| NP-RRBS-PC-P-1ng-p2-Jun20||PC-P-8||10||1||Plasma from UCSD-004 project | | NP-RRBS-PC-P-1ng-p2-Jun20||PC-P-8||10||1||Plasma from UCSD-004 project | ||
Line 100: | Line 111: | ||
|} | |} | ||
* UCSD-004 project: Pancreatic cancer samples | * UCSD-004 project: Pancreatic cancer samples | ||
* CTT: Colon tumor tissue | * CTT: Colon tumor tissue from Biochain | ||
* PC = Pancreatic cancer | * PC = Pancreatic cancer | ||
* T: Tissue | * T: Tissue | ||
* P: Plasma | * P: Plasma |
Latest revision as of 22:22, 8 July 2014
Summary of samples and their corresponding index[edit]
HiSeq Rapid run (HiSeq 140627_SN1001)[edit]
- PE 100+7
- NP-RRBS-CTT-5ng, Jun3
- NP-RRBS-CTT-100ng, Jun13
- NP-RRBS-PC-P-1ng-p1-Jun20
- |NP-RRBS-NC-P-1ng-p1-Jun20
Original Library ID | Combined library ID (for sequencing) | Sample ID | TruSeq Index | Rapid run lane# | Input DNA amount (ng) | Note |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-frozen 5ng_1 | 9 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-frozen 5ng_2 | 10 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-FFPE 5ng_1 | 11 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-FFPE 5ng_2 | 13 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-frozen-100ng_1 | 18 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-frozen-100ng_2 | 19 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-FFPE-100ng_1 | 20 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-FFPE-100ng_2 | 21 | 2 | 100 | Sample from Biochain |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-1_1 | 1 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-1_2 | 2 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-2_1 | 4 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-2_2 | 5 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-4_1 | 6 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-4_2 | 7 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-6_1 | 8 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-6_2 | 12 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-7_1 | 14 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-7_2 | 15 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-1 | 1 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-2 | 2 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-3 | 4 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-4 | 5 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-5 | 6 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-6 | 7 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-7 | 8 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-10 | 12 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-2 | 14 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-3 | 15 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-5 | 16 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-6 | 27 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
MiSeq run (MiSeq140630)[edit]
Original Library ID | Sample ID | TruSeq Index | Input DNA amount (ng) | Note |
NP-RRBS-PC-P-1ng-p2-Jun20 | PC-P-8 | 10 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p2-Jun20 | PC-P-9 | 11 | 1 | Plasma from UCSD-004 project |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-1 | 13 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-7 | 18 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-8 | 19 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-9 | 20 | 1 | Normal control plasma from Kang Zhang's lab |
- UCSD-004 project: Pancreatic cancer samples
- CTT: Colon tumor tissue from Biochain
- PC = Pancreatic cancer
- T: Tissue
- P: Plasma