Hosuk:LabNotes/2014-7-18: Difference between revisions
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*Generated by '''PSF Generator''' plug-in | *Generated by '''PSF Generator''' plug-in | ||
**Settings | **Settings | ||
[[File:PSFGeneratorSettings_2014-07-18 | [[File:PSFGeneratorSettings_2014-07-18.png|1100px]] | ||
Revision as of 19:43, 1 September 2014
Deconvolution and PSF images
PSF Functions
- Generated by PSF Generator plug-in
- Settings
File:PSFGeneratorSettings 2014-07-18.png
- PSF_20x_4096x4096_best1st.tif
- PSF_63x_2048x2048_best1st.tif
- PSF_63xZoom4_2048x2048_best1st.tif
- Each z0 images were selected from the result of the stack of PSF images.
Deconvolution
- Use deconvblind function
- [img_Decv, PSF] = deconvblind(img_raw, img_PSF);
- Then do medfilt2, and make img_double
- The latest Matlab code : PISA7_Shield_Core_v3.m
Update PISA Parameter
- PISA Param for 20x, 2048 x 2048
- Gaussian Std : 2
- Gaussian Upper : -2e-4
- area upper: 16
- area lower: 3
- axratio lower: 0.5
- circ upper: 1.6
- circ lower: 0.8
- perim conn: 8
- bkgmult lower: 4
- PISA Param for 20x, 4096 x 4096
- Gaussian Std : 2
- Gaussian Upper : -5e-4
- area upper: 50
- area lower: 6
- axratio lower: 0.5
- circ upper: 1.6
- circ lower: 0.8
- perim conn: 8
- bkgmult lower: 3
- PISA Param for 63x, 2048 x 2048
- Gaussian Std : 3
- Gaussian Upper : -2e-4
- area upper: 81
- area lower: 9
- axratio lower: 0.6
- circ upper: 1.6
- circ lower: 0.8
- perim conn: 8
- bkgmult lower: 4
- PISA Param for 63x Zoom 4, 2048 x 2048
- Gaussian Std : 5
- Gaussian Upper : -2e-5
- area upper: 1296
- area lower: 81
- axratio lower: 0.5
- circ upper: 1.6
- circ lower: 0.8
- perim conn: 8
- bkgmult lower: 4