Arichard:Notebook/bulkNxt2014Jul30: Difference between revisions
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===Sequencing statistics=== | ===Sequencing statistics=== | ||
[[Media:|Sequencing statistics for bulk Nextera libraries from May 20 sort]] | [[Media:bulkNxt2014Jul30Statistics.xlsx|Sequencing statistics for bulk Nextera libraries from May 20 sort]] |
Revision as of 18:58, 21 August 2014
Bulk Nextera libraries from neuronal nuclei
Neuronal nuclei were sorted May 20, 2014 by Gwen Kaeser from AD patient 25-00 and control patient 703. Both were females in their 80s. Both cortex and cerebellum were sorted for each patient. Nuclei were sorted from the Hi DCV (Hi PI staining for DNA) fraction of each peak. Sort conditions were +/- for NeuN.
- 25-00 Ctx+
- 25-00 Ctx-
- 25-00 Cbl+
- 7-03 Ctx+
- 7-03 Ctx-
- 7-03 Cbl+
~1200 nuclei were used for each sample. Hypotonic lysis buffer was used. TO BE CONTINUED.
Gels after Nextera PCR
13 total cycles.
File:BulkNxt2014Jul30GelsSlide1.JPG
File:BulkNxt2014Jul30GelsSlide2.JPG
File:BulkNxt2014Jul30GelsSlide3.JPG
File:BulkNxt2014Jul30GelsSlide4.JPG
Sequencing statistics
Sequencing statistics for bulk Nextera libraries from May 20 sort