Arichard:Notebook/bulkNxt2014Jul30: Difference between revisions
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[[Media:bulkNxt2014Jul30Statistics.xlsx|Sequencing statistics for bulk Nextera libraries from May 20 sort]] | [[Media:bulkNxt2014Jul30Statistics.xlsx|Sequencing statistics for bulk Nextera libraries from May 20 sort]] | ||
===Coverage, bias, and CNVs for 50K bins=== | |||
703CblPos | |||
[[File:703CblPos.jpg|400px]] | |||
703CtxNeg | |||
[[File:703CtxNeg.jpg|400px]] | |||
703CtxPos | |||
[[File:703CtxPos.jpg|400px]] | |||
2500CblPos | |||
[[File:2500CblPos.jpg|400px]] | |||
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[[File:2500CtxNeg.jpg|400px]] | |||
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[[File:2500CtxPos.jpg|400px]] |
Revision as of 19:03, 21 August 2014
Bulk Nextera libraries from neuronal nuclei
Neuronal nuclei were sorted May 20, 2014 by Gwen Kaeser from AD patient 25-00 and control patient 703. Both were females in their 80s. Both cortex and cerebellum were sorted for each patient. Nuclei were sorted from the Hi DCV (Hi PI staining for DNA) fraction of each peak. Sort conditions were +/- for NeuN.
- 25-00 Ctx+
- 25-00 Ctx-
- 25-00 Cbl+
- 7-03 Ctx+
- 7-03 Ctx-
- 7-03 Cbl+
~1200 nuclei were used for each sample. Hypotonic lysis buffer was used. TO BE CONTINUED.
Gels after Nextera PCR
13 total cycles.
File:BulkNxt2014Jul30GelsSlide1.JPG
File:BulkNxt2014Jul30GelsSlide2.JPG
File:BulkNxt2014Jul30GelsSlide3.JPG
File:BulkNxt2014Jul30GelsSlide4.JPG
Sequencing statistics
Sequencing statistics for bulk Nextera libraries from May 20 sort
Coverage, bias, and CNVs for 50K bins
703CblPos File:703CblPos.jpg 703CtxNeg File:703CtxNeg.jpg 703CtxPos File:703CtxPos.jpg 2500CblPos File:2500CblPos.jpg 2500CtxNeg File:2500CtxNeg.jpg 2500CtxPos File:2500CtxPos.jpg