Hosuk:LabNotes/2014-8-19: Difference between revisions

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====Analysis====
====Analysis====
*#Image aligning
=====Arrange data=====
*File name (decided at imaging) : [Sample]_[Resolution]_[Step#]_[Pos#]_z##_ch##.tif
**ex) PGP1F : PGP1F_Agi26k0gap_Decode_P20_S2_2014-08-09_20x_4k_Step1_Pos2_z01_ch01.tif
**ex) Tissue section : HBTissue_2014-08-12_RCAagain_20x_4k_Pos1_z00_ch00.tif
 
 
*Image aligning
*#Shift, Crop
*#Shift, Crop
*#Shift
*#Shift

Revision as of 20:56, 22 August 2014


Decoding with Agi26k0gap Padlock Probe

Analysis

Arrange data
  • File name (decided at imaging) : [Sample]_[Resolution]_[Step#]_[Pos#]_z##_ch##.tif
    • ex) PGP1F : PGP1F_Agi26k0gap_Decode_P20_S2_2014-08-09_20x_4k_Step1_Pos2_z01_ch01.tif
    • ex) Tissue section : HBTissue_2014-08-12_RCAagain_20x_4k_Pos1_z00_ch00.tif


  • Image aligning
    1. Shift, Crop
    2. Shift
    3. BF


Result

  • PGP1F_P20_S2_2014-08-09 --> , HBTissue_2014-08-12_S1