Daniel:Notebook/Haplotyping/DataMap: Difference between revisions
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>Djacobse (Created page with "=Data Map= Back to Notebook This page contains the data map for the haplotyping project, specifically tables that outline locations of each o...") |
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* * chromosomes 1 to 22 | |||
* ** indexes 73 to 96 | |||
* *** 3 or 6, some 6 pools (85 and 92) also have a **.2.fixed.bam notation |
Revision as of 17:36, 21 November 2014
Data Map
This page contains the data map for the haplotyping project, specifically tables that outline locations of each of the data types.
Hi-C Data
Bacterial Artificial Chromosome (BAC) Data
File Type | System | Path | File(s) |
VCF-All | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/filtered_vcf | pgp1_variants_bac_all.Indx73to96.vcf |
VCF-by chromosome | XXXX | XXXX | XXXX |
bam files-original | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/fixed.bam | PGP1_***BacPool_Indx**.fixed.bam |
bam files-contigs | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/bacContigs | Indx**.bacs.bam |
bam files-by chrom | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/bams_by_chromosome | chr*/chr*.Indx**.bam |
HAIRS-raw | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/HAIRS | chr*/chr*.Indx**.bam |
HAIRS-merge | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/HAIRS | chr*/fragments.chr*.bac.txt |
haplotypes | Genome Miner | /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/haplotypes | haplotype.chr*.bac.txt |
- * chromosomes 1 to 22
- ** indexes 73 to 96
- *** 3 or 6, some 6 pools (85 and 92) also have a **.2.fixed.bam notation