Daniel:Notebook/Haplotyping/SISSORPipeline/2014-12-2: Difference between revisions

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>Djacobse
(Created page with "=Analyzing Eric's Algorithm= Back to Main Eric's Original Algorithm The purpose of today i...")
 
>Djacobse
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#convert the bam format to sam format
#convert the bam format to sam format
#[[Media:Varbin.50k.sam.py.txt|Custom python script]]
#[[Media:varbin.50k.sam.py.txt|Custom python script]]
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Revision as of 20:29, 2 December 2014

Analyzing Eric's Algorithm

Back to Main


Eric's Original Algorithm

The purpose of today is to understand the steps in Eric's algorithm at a high level. I may, in the future, wish to edit the algorithm itself (unlikely) or simply port it to a more friendly analysis pipeline, since the current pipeline requires a decent amount of excel copy/pasting. Ideally, it should be run with a single script.

Algorithm Decomposition

Note: The decomposition uses the same numbering as Eric's original algorithm (i.e. step 1 is my analysis of his step 1)

  1. convert the bam format to sam format
  2. Custom python script