Daniel:Notebook/Haplotyping/SISSORPipeline/2014-12-2: Difference between revisions
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>Djacobse (Created page with "=Analyzing Eric's Algorithm= Back to Main Eric's Original Algorithm The purpose of today i...") |
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Revision as of 20:29, 2 December 2014
Analyzing Eric's Algorithm
The purpose of today is to understand the steps in Eric's algorithm at a high level. I may, in the future, wish to edit the algorithm itself (unlikely) or simply port it to a more friendly analysis pipeline, since the current pipeline requires a decent amount of excel copy/pasting. Ideally, it should be run with a single script.
Algorithm Decomposition
Note: The decomposition uses the same numbering as Eric's original algorithm (i.e. step 1 is my analysis of his step 1)
- convert the bam format to sam format
- Custom python script