EricChu:LabNotesMDA/2015-2-25: Difference between revisions
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>Ericchu (Created page with "~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam ~/data_Syn_15T/HL163/BWA$...") |
>Ericchu No edit summary |
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~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam | ~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam | ||
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam | ~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam | ||
~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt | ~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt |
Revision as of 19:12, 25 February 2015
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam
~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt