Shicheng Guo: Difference between revisions
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== | == Scientific Project== | ||
*[[Shicheng: | *[[Shicheng:MONOD|MONOD: Methylation Haplotyping for Non-invasive Diagnosis]] | ||
*[[Shicheng: | *[[Shicheng:GMPOR|GMPOR: Genome-wide DNA methylation profile of reprogramming]] | ||
*[[Shicheng: | *[[Shicheng:Twins|NASA twins project: Smoking influence to DNA methylation haplotype]] | ||
*[[Shicheng:Deconvolution|IDRE: Integrate Deconvolution to RNA-seq and Epigenetics dataset]] | |||
*[[Shicheng: | *[[Shicheng:To-do-List|To-Do-List]] | ||
*[[Shicheng: | |||
== | ==Annotation and PublicData== | ||
*[[Shicheng:SALK2015-ROAD|Human Roadmap Epigenome Project]] | |||
*[[Shicheng:Research_Follow|Research Result Follow ]] | |||
*[[Shicheng:GEO_Methylation|GEO Methylation Microarray]] | |||
*[[Shicheng:TCGA_Methylation|TCGA Methylation Dataset]] | |||
*[[Shicheng:Encode_Methylation|ENCODE Epigenetics Project]] | |||
*[[Shicheng:Zhang_UCSC|UCSC Track of Dr. Zhang's Lab]] | |||
*[[Shicheng:Publication_collection|Publication Collection]] | |||
*[[Shicheng:DennisLo2015-PNAS|DennisLo2015-PNAS]] | |||
*[[Shicheng:Xliu2014GB|Xliu2014-GenomeBiology]] | |||
*[[Shicheng:Heyn2016|Holger2016-GenomeBiology]] | |||
*[[Shicheng:Holger2012|Holger2013-PNAS]] | |||
*[[Shicheng:Ziller2013|Ziller2013-Nature]] | |||
*[[Shicheng:Tang2016|Tang2016CellResearch]] | |||
*[[Shicheng:LaSalle2012|LaSalle2012PNAS]] | |||
*[[Shicheng:Pellegrini2015|Pellegrini2015]] | |||
*[[Shicheng:Chen2016|Chen2016CellResearch]] | |||
*[[Shicheng:David2016|David2016NatureCommunication]] | |||
*[[Shicheng:Schroeder2013|Schroeder2013PNAS]] | |||
*[[Shicheng:Kevin2014|Kevin2014GenomeBiology]] | |||
*[[Shicheng:Yanhuang2010|Yanhuang2010]] | |||
*[[Shicheng:Feinberg2017|Feinberg2017NG]] | |||
==Codes and Pipeline== | |||
*[[Shicheng:IT|Kun's IT Maintenance]] | |||
*[[Shicheng:AnalysisPipeline|Genomic Data Analysis Pipeline]] | |||
*[[Shicheng:BS-seq|BS-Squencing]] | |||
*[[Shicheng:De-Convolution|De-Convolution]] | |||
*[[Shicheng:GEO_Matric|Statistics and Metric]] | |||
*[[Shicheng:GEO_Pipeline|GEO Methylation Meta-Analysis]] | |||
*[[Shicheng:HEP_Pipeline|RRBS Methylation Analysis]] | |||
*[[Shicheng:MHL_Calculate|Methylation Haplotype and Loading]] | |||
*[[Shicheng:Public_tools|Public tools]] | |||
*[[Shicheng:R_script|R Script and Figure]] | |||
*[[Shicheng:Linux and Perl|Linux and Perl]] | |||
*[[Shicheng:Cheat_sheet| Cheat Sheet]] | |||
*[[Shicheng:Software_and_Analysis_Test| Software and Analysis Test]] | |||
*[[Shicheng:Sequencing_Variance_Calling|Genome Sequencing and Variation Calling]] | |||
*[[Shicheng:torque_PBS| Torque and PBS]] | |||
*[[Shicheng:computational_time| Computational Time Estimation]] | |||
*[[Shicheng:GREAT-BIOINFOR| BATCH mode of GREAT GO-ANALYSIS]] | |||
==Presentation and Poster== | |||
*[[2015]] | |||
*[[2016]] | |||
== Daily Notebook== | == Daily Notebook== | ||
<calendar> | |||
name=Shicheng:Calendar | |||
format=%name/NOTES/%year-%month-%day | |||
date=2017/04/08 | |||
view=oneyear | |||
</calendar> | |||
<calendar> | |||
name=Shicheng:Calendar | |||
format=%name/NOTES/%year-%month-%day | |||
date=2016/01/05 | |||
view=oneyear | |||
</calendar> | |||
<calendar> | <calendar> | ||
name=Shicheng:Calendar | name=Shicheng:Calendar |
Latest revision as of 00:04, 25 January 2017
Scientific Project[edit]
- MONOD: Methylation Haplotyping for Non-invasive Diagnosis
- GMPOR: Genome-wide DNA methylation profile of reprogramming
- NASA twins project: Smoking influence to DNA methylation haplotype
- IDRE: Integrate Deconvolution to RNA-seq and Epigenetics dataset
- To-Do-List
Annotation and PublicData[edit]
- Human Roadmap Epigenome Project
- Research Result Follow
- GEO Methylation Microarray
- TCGA Methylation Dataset
- ENCODE Epigenetics Project
- UCSC Track of Dr. Zhang's Lab
- Publication Collection
- DennisLo2015-PNAS
- Xliu2014-GenomeBiology
- Holger2016-GenomeBiology
- Holger2013-PNAS
- Ziller2013-Nature
- Tang2016CellResearch
- LaSalle2012PNAS
- Pellegrini2015
- Chen2016CellResearch
- David2016NatureCommunication
- Schroeder2013PNAS
- Kevin2014GenomeBiology
- Yanhuang2010
- Feinberg2017NG
Codes and Pipeline[edit]
- Kun's IT Maintenance
- Genomic Data Analysis Pipeline
- BS-Squencing
- De-Convolution
- Statistics and Metric
- GEO Methylation Meta-Analysis
- RRBS Methylation Analysis
- Methylation Haplotype and Loading
- Public tools
- R Script and Figure
- Linux and Perl
- Cheat Sheet
- Software and Analysis Test
- Genome Sequencing and Variation Calling
- Torque and PBS
- Computational Time Estimation
- BATCH mode of GREAT GO-ANALYSIS
Presentation and Poster[edit]
Daily Notebook[edit]
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2017/04/08 view=oneyear </calendar>
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2016/01/05 view=oneyear </calendar>
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2015/04/08 view=oneyear </calendar>