Ns126:Encode Methylation: Difference between revisions
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=RRBS Data Analysis to Encode Project= | =RRBS Data Analysis to Encode Project= | ||
==Aim== | |||
*Aim 1: methylation block with RRBS dataset | |||
==Background== | ==Background== |
Revision as of 06:33, 1 August 2015
RRBS Data Analysis to Encode Project
Aim
- Aim 1: methylation block with RRBS dataset
Background
- 1, Encode: http://genome.ucsc.edu/ENCODE/downloads.html
- 2, Encode|RRBS1: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeHaibMethylRrbs/
- 3, Encode|RRBS2: http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=437674359_aUhx08DjchWwtBjyCYv61EB7Yy8S&c=chr1&g=wgEncodeHaibMethylRrbs
- 4, Encode|Methy450K: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeHaibMethyl450/
- 5, Encode|software: https://www.encodeproject.org/software/
Method
Data Download
Fastq and bed files can be downloaded from Encode Project. Files list can be downloaded here File:Rrbs.encode.files.txt.
101 RRBS were downloaded from [[]]