Ns126:Encode Methylation: Difference between revisions
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==Method== | ==Method== | ||
===Data Download=== | ===Data Download=== | ||
Fastq and bed files can be downloaded from Encode Project. 101 RRBS data (bed files) were downloaded. 2,646,999 CpG loci were covered by 101 RRBS data while 866,979 CpG loci were detected in at least 80% samples. | Fastq and bed files can be downloaded from Encode Project. 101 RRBS data (bed files) were downloaded. 2,646,999 CpG loci were covered by 101 RRBS data while 866,979 CpG loci (32.8%) were detected in at least 80% samples. | ||
==Result== | ==Result== |
Revision as of 15:09, 1 August 2015
RRBS Data Analysis to Encode Project
Aim
- Aim 1: methylation block with RRBS dataset
Background
- 1, Encode: http://genome.ucsc.edu/ENCODE/downloads.html
- 2, Encode|RRBS1: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeHaibMethylRrbs/
- 3, Encode|RRBS2: http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=437674359_aUhx08DjchWwtBjyCYv61EB7Yy8S&c=chr1&g=wgEncodeHaibMethylRrbs
- 4, Encode|Methy450K: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeHaibMethyl450/
- 5, Encode|software: https://www.encodeproject.org/software/
Method
Data Download
Fastq and bed files can be downloaded from Encode Project. 101 RRBS data (bed files) were downloaded. 2,646,999 CpG loci were covered by 101 RRBS data while 866,979 CpG loci (32.8%) were detected in at least 80% samples.