Ns126:Calendar/NOTES/2015-8-31: Difference between revisions

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* Genomic region enrichment analysis
* Genomic region enrichment analysis
** code [[File:R20150831.BedEnrichment.txt]]
** code [[File:R20150831.BedEnrichment.txt]]
** Annotation Database:
** Annotation Database:[[File:R20150831.BedEnrichment.Annaotation.Database.hg19.txt]]

Revision as of 07:37, 1 September 2015


  • liftover epigenetic annotation from hg18 to hg19
./liftOver Hic.topological.domain.hESC.hg18.bed hg18ToHg19.over.chain Hic.topological.domain.hESC.hg19.bed tmp
./liftOver Hic.topological.domain.IMR90.hg18.bed  hg18ToHg19.over.chain Hic.topological.domain.IMR90.hg19.bed tmp
./liftOver Hic.boundary.IMR90.hg18.bed hg18ToHg19.over.chain Hic.boundary.IMR90.hg19.bed tmp
./liftOver Hic.boundary.hESC.hg18.bed hg18ToHg19.over.chain Hic.boundary.hESC.hg19.bed tmp
./liftOver Hic.common.boundary.hESC.IMR90.hg18.bed hg18ToHg19.over.chain Hic.common.boundary.hESC.IMR90.hg19.bed tmp