Ns126:Calendar/NOTES/2015-8-31: Difference between revisions
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* Genomic region enrichment analysis | * Genomic region enrichment analysis | ||
** code [[File:R20150831.BedEnrichment.txt]] | ** code [[File:R20150831.BedEnrichment.txt]] | ||
** Annotation Database: | ** Annotation Database:[[File:R20150831.BedEnrichment.Annaotation.Database.hg19.txt]] |
Revision as of 07:37, 1 September 2015
- liftover epigenetic annotation from hg18 to hg19
./liftOver Hic.topological.domain.hESC.hg18.bed hg18ToHg19.over.chain Hic.topological.domain.hESC.hg19.bed tmp ./liftOver Hic.topological.domain.IMR90.hg18.bed hg18ToHg19.over.chain Hic.topological.domain.IMR90.hg19.bed tmp ./liftOver Hic.boundary.IMR90.hg18.bed hg18ToHg19.over.chain Hic.boundary.IMR90.hg19.bed tmp ./liftOver Hic.boundary.hESC.hg18.bed hg18ToHg19.over.chain Hic.boundary.hESC.hg19.bed tmp ./liftOver Hic.common.boundary.hESC.IMR90.hg18.bed hg18ToHg19.over.chain Hic.common.boundary.hESC.IMR90.hg19.bed tmp
- Genomic region enrichment analysis
- code File:R20150831.BedEnrichment.txt
- Annotation Database:File:R20150831.BedEnrichment.Annaotation.Database.hg19.txt