Daniel:Notebook/Haplotyping/BAC-HiC: Difference between revisions
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##[[Media:CombineHAIRS.sh|Merge script for combining]] | ##[[Media:CombineHAIRS.sh|Merge script for combining]] | ||
##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/BACData|BAC Data Processing]] | ##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/BACData|BAC Data Processing]] | ||
# | #Next, run hapcut in the log likelihood format | ||
##[[Media:Llhapcut.sh|HAPCUT script]] |
Revision as of 21:26, 9 December 2015
Processing BAC and Hi-C Data
This page describes the data processing for the BAC data in the haplotyping project. For data locations, visit the Data Map.
Processing
- The data starts as the uncombined hair files
- Next, run hapcut in the log likelihood format