Daniel:Notebook/ComboLock/Sequencing: Difference between revisions
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|- style="font-size:12pt" | |- style="font-size:12pt" | ||
| height="15" | DEJ20160630_CLCProbe_Test2 | | height="15" | [[Daniel:Notebook/ComboLock/2016-6-30|DEJ20160630_CLCProbe_Test2]] | ||
| align="center" | 6/23/16 | | align="center" | [[Daniel:Notebook/ComboLock/2016-6-23|6/23/16]] | ||
| align="center" align="center" | 2,3,5,6 | | align="center" align="center" | 2,3,5,6 | ||
| | CGATGT, TTAGGC, ACAGTG, GCCAAT | | | CGATGT, TTAGGC, ACAGTG, GCCAAT | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="30" | DEJ20160706_CL_P01 | | height="30" | [[Daniel:Notebook/ComboLock/2016-7-6|DEJ20160706_CL_P01]] | ||
| align="center" | 6/28/16 | | align="center" | [[Daniel:Notebook/ComboLock/2016-6-28|6/28/16]] | ||
| align="center" | 1-7 | | align="center" | 1-7 | ||
| | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | | | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
| height="15" | DEJ20160706_CL_C02 | | height="15" | [[Daniel:Notebook/ComboLock/2016-7-6|DEJ20160706_CL_C02]] | ||
| align="center" | 6/29/16 | | align="center" | [[Daniel:Notebook/ComboLock/2016-6-29|6/29/16]] | ||
| align="center" | 10-13 | | align="center" | 10-13 | ||
| | TAGCTT, GGCTAC, CTTGTA, CCATGA | | | TAGCTT, GGCTAC, CTTGTA, CCATGA | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="30" | DEJ20160715_C03 | | height="30" | [[Daniel:Notebook/ComboLock/2016-7-15|DEJ20160715_C03]] | ||
| align="center" | 7/11/16 | | align="center" | [[Daniel:Notebook/ComboLock/2016-7-11|7/11/16]] | ||
| align="center" | 16-20 | | align="center" | 16-20 | ||
| | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | | | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | ||
|} | |} |
Revision as of 22:30, 15 July 2016
Sequencing Lists
This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.
Sequencing Table
Expected length of combolock amplicons with total sequencing length for the forward and reverse directions
Name | Length (bp) | Forward Seq. Length | Reverse Seq. Length |
LinkerL | 18 | 18 | 148 |
Primer2 | 18 | 36 | 130 |
BC-C1 | 8 | 44 | 112 |
Primer4 | 18 | 62 | 104 |
BCLatch | 8 | 70 | 86 |
UMI | 8 | 78 | 78 |
Primer6 | 18 | 96 | 70 |
BC-C2 | 8 | 104 | 52 |
Primer12 | 18 | 122 | 44 |
BCPadlock | 8 | 130 | 26 |
LinkerR | 18 | 148 | 18 |
07-08-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
07-15-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC |