Daniel:Notebook/ComboLock/Sequencing: Difference between revisions
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|- style="font-size:12pt" | |- style="font-size:12pt" | ||
|style="text-decoration:underline;color:#0000FF" height="15" | [ | |style="text-decoration:underline;color:#0000FF" height="15" | [[Daniel:Notebook/ComboLock/2016-6-30|DEJ20160630_CLCProbe_Test2]] | ||
|style="color:#0000FF" align="center" | [ | |style="color:#0000FF" align="center" | [[Daniel:Notebook/ComboLock/2016-6-23|6/23/16]] | ||
|style="text-decoration:none" align="center" align="center" | 2,3,5,6 | |style="text-decoration:none" align="center" align="center" | 2,3,5,6 | ||
| | CGATGT, TTAGGC, ACAGTG, GCCAAT | | | CGATGT, TTAGGC, ACAGTG, GCCAAT | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
|style="text-decoration:underline;color:#0000FF" height="30" | [ | |style="text-decoration:underline;color:#0000FF" height="30" | [[Daniel:Notebook/ComboLock/2016-7-6|DEJ20160706_CL_P01]] | ||
|style="color:#0000FF" align="center" | [ | |style="color:#0000FF" align="center" | [[Daniel:Notebook/ComboLock/2016-6-28|6/28/16]] | ||
|style="text-decoration:none" align="center" | 1-7 | |style="text-decoration:none" align="center" | 1-7 | ||
| | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | | | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
|style="text-decoration:underline;color:#0000FF" height="15" | [ | |style="text-decoration:underline;color:#0000FF" height="15" | [[Daniel:Notebook/ComboLock/2016-7-6|DEJ20160706_CL_C02]] | ||
|style="color:#0000FF" align="center" | [ | |style="color:#0000FF" align="center" | [[Daniel:Notebook/ComboLock/2016-6-29|6/29/16]] | ||
|style="text-decoration:none" align="center" | 10-13 | |style="text-decoration:none" align="center" | 10-13 | ||
| | TAGCTT, GGCTAC, CTTGTA, CCATGA | | | TAGCTT, GGCTAC, CTTGTA, CCATGA | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
|style="text-decoration:underline;color:#0000FF" height="15" | [ | |style="text-decoration:underline;color:#0000FF" height="15" | [[Daniel:Notebook/ComboLock/2016-7-15|DEJ20160715_C03]] | ||
|style="color:#0000FF" align="center" | [ | |style="color:#0000FF" align="center" | [[Daniel:Notebook/ComboLock/2016-7-11|7/11/16]] | ||
|style="text-decoration:none" align="center" | 16-20 | |style="text-decoration:none" align="center" | 16-20 | ||
| | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | | | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
| height="15" valign="bottom" | DEJ20160722_CL_C04 | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-22|DEJ20160722_CL_C04]] | ||
| align="center" valign="bottom" | 7/18/16 | | align="center" valign="bottom" | [[[[Daniel:Notebook/ComboLock/2016-7-18|7/18/16]] | ||
| align="center" align="center" valign="bottom" | 21,22,23,26,27 | | align="center" align="center" valign="bottom" | 21,22,23,26,27 | ||
| valign="bottom" | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | | valign="bottom" | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
| height="15" valign="bottom" | DEJ20160727_CL_C05 | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-27|DEJ20160727_CL_C05]] | ||
| align="center" valign="bottom" | 7/25/16 | | align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-25|7/25/16]] | ||
| align="center" valign="bottom" | 9-13 | | align="center" valign="bottom" | 9-13 | ||
| valign="bottom" | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA | | valign="bottom" | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA |
Revision as of 19:12, 28 July 2016
Sequencing Lists
This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.
Sequencing Table
Expected length of combolock amplicons with total sequencing length for the forward and reverse directions
Name | Length (bp) | Forward Seq. Length | Reverse Seq. Length |
LinkerL | 18 | 18 | 148 |
Primer2 | 18 | 36 | 130 |
BC-C1 | 8 | 44 | 112 |
Primer4 | 18 | 62 | 104 |
BCLatch | 8 | 70 | 86 |
UMI | 8 | 78 | 78 |
Primer6 | 18 | 96 | 70 |
BC-C2 | 8 | 104 | 52 |
Primer12 | 18 | 122 | 44 |
BCPadlock | 8 | 130 | 26 |
LinkerR | 18 | 148 | 18 |
Master List
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC |
DEJ20160722_CL_C04 | [[7/18/16 | 21,22,23,26,27 | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG |
DEJ20160727_CL_C05 | 7/25/16 | 9-13 | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA |
07-08-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
07-15-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC |