Daniel:Notebook/ComboLock/Sequencing: Difference between revisions

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Revision as of 18:35, 16 November 2016

Sequencing Lists

Back to Notebook

This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.

Zhang Lab Indexes

Sequencing Table

Expected length of combolock amplicons with total sequencing length for the forward and reverse directions

Name Length (bp) Forward Seq. Length Reverse Seq. Length
LinkerL 18 18 148
Primer2 18 36 130
BC-C1 8 44 112
Primer4 18 62 104
BCLatch 8 70 86
UMI 8 78 78
Primer6 18 96 70
BC-C2 8 104 52
Primer12 18 122 44
BCPadlock 8 130 26
LinkerR 18 148 18

Master List

Sample Name Experiment Start Date Indexes Index Sequences
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA
DEJ20160715_C03 7/11/16 16-20 GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC
DEJ20160722_CL_C04 7/18/16 21,22,23,26,27 CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG
DEJ20160727_CL_C05 7/25/16 9-13 GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA
DEJ20160822_CL_PC01 8/18/16 10-13 TAGCTT,GGCTAC,CTTGTA,CCATGA
DEJ20160826_CL_PC02 8/22/16 33,41,42,44 CGCAAC,GGGAAC,GAAAAG,GCATCC
DEJ20160906_CL_PC03 8/29/16 34-36 AACTGA,ATCGGG,CAAGCA
DEJ201610_CL_PCC01 10/07/16 24,25 ATTCGC,TACTGC
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC


DEJ-CL-CellC01-20161116 11/7/16 25 TACTGC

07-08-2016

Sample Name Experiment Start Date Indexes Index Sequences
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA

07-15-2016

Sample Name Experiment Start Date Indexes Index Sequences
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA
DEJ20160715_C03 7/11/16 16-20 GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC

08-22-2016

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160822_CL_PC01 8/18/16 10-13 TAGCTT,GGCTAC,CTTGTA,CCATGA Analysis and Results

08-26-2016

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160826_CL_PC02 8/22/16 33, 40-42 CGCAAC,TGACGG,GGGAAC,GAAAAG 9/12/16

09-12-2016

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160906_CL_PC03 8/29/16 34-36 AACTGA,ATCGGG,CAAGCA 9/27/16

10-18-2016

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20161013_CL_PCC01 10/7/16 24,25 ATTCGC,TACTGC 10/20/16

11-10-2016

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC