Daniel:Notebook/ComboLock/Sequencing: Difference between revisions
Jump to navigation
Jump to search
>Djacobse |
>Djacobse m (→Master List) |
||
(34 intermediate revisions by the same user not shown) | |||
Line 101: | Line 101: | ||
|style="text-decoration:none" align="center" align="center" | 2,3,5,6 | |style="text-decoration:none" align="center" align="center" | 2,3,5,6 | ||
| | CGATGT, TTAGGC, ACAGTG, GCCAAT | | | CGATGT, TTAGGC, ACAGTG, GCCAAT | ||
| & | | | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
Line 108: | Line 108: | ||
|style="text-decoration:none" align="center" | 1-7 | |style="text-decoration:none" align="center" | 1-7 | ||
| | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | | | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | ||
|   | | | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
Line 115: | Line 115: | ||
|style="text-decoration:none" align="center" | 10-13 | |style="text-decoration:none" align="center" | 10-13 | ||
| | TAGCTT, GGCTAC, CTTGTA, CCATGA | | | TAGCTT, GGCTAC, CTTGTA, CCATGA | ||
|   | | | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
Line 122: | Line 122: | ||
|style="text-decoration:none" align="center" | 16-20 | |style="text-decoration:none" align="center" | 16-20 | ||
| | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | | | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | ||
|   | | | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
Line 129: | Line 129: | ||
| align="center" align="center" valign="bottom" | 21,22,23,26,27 | | align="center" align="center" valign="bottom" | 21,22,23,26,27 | ||
| valign="bottom" | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | | valign="bottom" | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | ||
|   | | | ||
|- style="font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-27|DEJ20160727_CL_C05]] | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-27|DEJ20160727_CL_C05]] | ||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-25|7/25/16]] | | align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-7-25|7/25/16]] | ||
| align="center" valign="bottom" | 9-13 | | align="center" valign="bottom" | 9-13 | ||
| valign="bottom" | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA | | valign="bottom" | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA | ||
|   | | | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
Line 143: | Line 143: | ||
| align="center" valign="bottom" | 10-13 | | align="center" valign="bottom" | 10-13 | ||
| valign="bottom" | TAGCTT,GGCTAC,CTTGTA,CCATGA | | valign="bottom" | TAGCTT,GGCTAC,CTTGTA,CCATGA | ||
| | | align="center" | [[Daniel:Notebook/ComboLock/2016-8-25|8/25/16]] | ||
|- style="font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-8-26|DEJ20160826_CL_PC02]] | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-8-26|DEJ20160826_CL_PC02]] | ||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-8-22|8/22/16]] | | align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-8-22|8/22/16]] | ||
| align="center" valign="bottom" | 33,41,42,44 | | align="center" valign="bottom" | 33,41,42,44 | ||
| valign="bottom" | CGCAAC,GGGAAC,GAAAAG,GCATCC | | valign="bottom" | CGCAAC,GGGAAC,GAAAAG,GCATCC | ||
| | | align="center" | [[Daniel:Notebook/ComboLock/2016-9-12|9/12/16]] | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
Line 157: | Line 157: | ||
| align="center" valign="bottom" | 34-36 | | align="center" valign="bottom" | 34-36 | ||
| valign="bottom" | AACTGA,ATCGGG,CAAGCA | | valign="bottom" | AACTGA,ATCGGG,CAAGCA | ||
| | | align="center" | [[Daniel:Notebook/ComboLock/2016-9-27|9/27/16]] | ||
|- style="font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-10-13|DEJ201610_CL_PCC01]] | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-10-13|DEJ201610_CL_PCC01]] | ||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-10-7|10/07/16]] | | align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-10-7|10/07/16]] | ||
| align="center" valign="bottom" | 24,25 | | align="center" valign="bottom" | 24,25 | ||
| valign="bottom" | ATTCGC,TACTGC | | valign="bottom" | ATTCGC,TACTGC | ||
| | | align="center" | [[Daniel:Notebook/ComboLock/2016-10-20|10/20/16]] | ||
|- style="font-size:12pt" | |- style="font-size:12pt" | ||
Line 171: | Line 171: | ||
| align="center" valign="bottom" | 30,31 | | align="center" valign="bottom" | 30,31 | ||
| valign="bottom" | TTAGTG,CACCAC | | valign="bottom" | TTAGTG,CACCAC | ||
| align="center" | [[Daniel:Notebook/ComboLock/2016-11-18|11/18/16]], [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]] | | align="center" | [[Daniel:Notebook/ComboLock/2016-11-18|11/18/16]], [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]], [[Daniel:Notebook/ComboLock/2016-12-6|12/06/16]] | ||
|- style="font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-16|DEJ-CL-CellC01-20161116]] | | height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-16|DEJ-CL-CellC01-20161116]] | ||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-7|11/7/16]] | | align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-7|11/7/16]] | ||
| align="center" valign="bottom" | 25 | | align="center" valign="bottom" | 25 | ||
| valign="bottom" | TACTGC | | valign="bottom" | TACTGC | ||
| align="center" | [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]] | | align="center" | [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]], [[Daniel:Notebook/ComboLock/2016-12-6|12/06/16]] | ||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-1-9|DEJ20160109_CLv2_PC]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-1-6|1/6/17]] | |||
| align="center" valign="bottom" | 20 | |||
| valign="bottom" | CCTGTC | |||
| align="center" | | |||
|- style="background-color:#D9D9D9;font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-1-26|DEJ20160109_CLv3_RCA]] and [[Daniel:Notebook/ComboLock/2017-1-30|here]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-1-23|1/23/17]] | |||
| align="center" valign="bottom" | 21-23,25-27 | |||
| valign="bottom" | CAACCC,CTCGGA,TCGAAA,TACTGC,TCGTGA,TACGCG | |||
| align="center" | | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-5-3|DEJ20170503-CLPCv3-04]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-4-28|4/28/17]] | |||
| align="center" valign="bottom" | 20,24-27 | |||
| valign="bottom" | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-5-16|May 16 2017]] | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-10|DEJ20170610-CLPCv3-05]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-5|6/5/17]] | |||
| align="center" valign="bottom" | 20,21,25-27,29 | |||
| valign="bottom" | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-26|June 26, 2017]] | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-20|DEJ20170610-CLAbPC-01]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-14|6/14/17]] | |||
| align="center" valign="bottom" | 30-35 | |||
| valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-28|June 28, 2017]] | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-7-11|DEJ20170711-MixPC-01]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-7-6|7/6/17]] | |||
| align="center" valign="bottom" | 20-25 | |||
| valign="bottom" | CCTGTC,CAACCC,CTCGGA,TCGAAA,ATTCGC,TACTGC | |||
| align="center" | | |||
|} | |||
==Sequencing Runs 2017== | |||
===Spring 2017=== | |||
====06-23-2017==== | |||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="background-color:#B7DEE8;font-size:12pt;font-weight:bold" align="center" valign="bottom" | |||
| width="203" height="30" | Sample Name | |||
| width="75" | Experiment Start Date | |||
| width="77" | Indexes | |||
| width="245" | Index Sequences | |||
| width="90" | Results | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-10|DEJ20170610-CLPCv3-05]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-5|6/5/17]] | |||
| align="center" valign="bottom" | 20,21,25-27,29 | |||
| valign="bottom" | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-26|June 26, 2017]] | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-20|DEJ20170610-CLAbPC-01]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-14|6/14/17]] | |||
| align="center" valign="bottom" | 30-35 | |||
| valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-28|June 28, 2017]] | |||
|} | |||
====05-08-2017==== | |||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="background-color:#B7DEE8;font-size:12pt;font-weight:bold" align="center" valign="bottom" | |||
| width="203" height="30" | Sample Name | |||
| width="75" | Experiment Start Date | |||
| width="77" | Indexes | |||
| width="245" | Index Sequences | |||
| width="90" | Results | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-5-3|DEJ20170503-CLPCv3-04]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-4-28|4/28/17]] | |||
| align="center" valign="bottom" | 20,24-27 | |||
| valign="bottom" | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | |||
| align="center" | [[Daniel:Notebook/ComboLock/2017-5-16|May 16 2017]] | |||
|} | |} | ||
Line 370: | Line 462: | ||
| valign="bottom" | TTAGTG,CACCAC | | valign="bottom" | TTAGTG,CACCAC | ||
| align="center" valign="center" | [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]] | | align="center" valign="center" | [[Daniel:Notebook/ComboLock/2016-11-21|11/21/16]] | ||
|} | |||
====12-05-2016==== | |||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="background-color:#B7DEE8;font-size:12pt;font-weight:bold" align="center" | |||
| width="203" height="30" | Sample Name | |||
| width="75" | Experiment Start Date | |||
| width="77" | Indexes | |||
| width="285" | Index Sequences | |||
| width="75" | Results | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-16|DEJ-CL-CellC01-20161116]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-7|11/7/16]] | |||
| align="center" valign="bottom" | 25 | |||
| valign="bottom" | TACTGC | |||
| valign="center" |[[Daniel:Notebook/ComboLock/2016-12-6|12/6/16]] | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-11-3|DEJ-CL-RCA01-20161103]] | |||
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2016-10-31|10/31/16]] | |||
| align="center" valign="bottom" | 30,31 | |||
| valign="bottom" | TTAGTG,CACCAC | |||
| align="center" valign="center" | [[Daniel:Notebook/ComboLock/2016-12-6|12/6/16]] | |||
|} | |} |
Latest revision as of 18:29, 11 July 2017
Sequencing Lists[edit]
This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.
Sequencing Table
Expected length of combolock amplicons with total sequencing length for the forward and reverse directions
Name | Length (bp) | Forward Seq. Length | Reverse Seq. Length |
LinkerL | 18 | 18 | 148 |
Primer2 | 18 | 36 | 130 |
BC-C1 | 8 | 44 | 112 |
Primer4 | 18 | 62 | 104 |
BCLatch | 8 | 70 | 86 |
UMI | 8 | 78 | 78 |
Primer6 | 18 | 96 | 70 |
BC-C2 | 8 | 104 | 52 |
Primer12 | 18 | 122 | 44 |
BCPadlock | 8 | 130 | 26 |
LinkerR | 18 | 148 | 18 |
Master List[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT | |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA | |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | |
DEJ20160722_CL_C04 | 7/18/16 | 21,22,23,26,27 | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | |
DEJ20160727_CL_C05 | 7/25/16 | 9-13 | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA | |
DEJ20160822_CL_PC01 | 8/18/16 | 10-13 | TAGCTT,GGCTAC,CTTGTA,CCATGA | 8/25/16 |
DEJ20160826_CL_PC02 | 8/22/16 | 33,41,42,44 | CGCAAC,GGGAAC,GAAAAG,GCATCC | 9/12/16 |
DEJ20160906_CL_PC03 | 8/29/16 | 34-36 | AACTGA,ATCGGG,CAAGCA | 9/27/16 |
DEJ201610_CL_PCC01 | 10/07/16 | 24,25 | ATTCGC,TACTGC | 10/20/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/18/16, 11/21/16, 12/06/16
|
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 11/21/16, 12/06/16 |
DEJ20160109_CLv2_PC | 1/6/17 | 20 | CCTGTC | |
DEJ20160109_CLv3_RCA and here | 1/23/17 | 21-23,25-27 | CAACCC,CTCGGA,TCGAAA,TACTGC,TCGTGA,TACGCG | |
DEJ20170503-CLPCv3-04 | 4/28/17 | 20,24-27 | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | May 16 2017 |
DEJ20170610-CLPCv3-05 | 6/5/17 | 20,21,25-27,29 | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | June 26, 2017 |
DEJ20170610-CLAbPC-01 | 6/14/17 | 30-35 | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | June 28, 2017 |
DEJ20170711-MixPC-01 | 7/6/17 | 20-25 | CCTGTC,CAACCC,CTCGGA,TCGAAA,ATTCGC,TACTGC |
Sequencing Runs 2017[edit]
Spring 2017[edit]
06-23-2017[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20170610-CLPCv3-05 | 6/5/17 | 20,21,25-27,29 | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | June 26, 2017 |
DEJ20170610-CLAbPC-01 | 6/14/17 | 30-35 | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | June 28, 2017 |
05-08-2017[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20170503-CLPCv3-04 | 4/28/17 | 20,24-27 | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | May 16 2017 |
Sequencing Runs 2016[edit]
Summer 2016[edit]
07-08-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
07-15-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC |
08-22-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160822_CL_PC01 | 8/18/16 | 10-13 | TAGCTT,GGCTAC,CTTGTA,CCATGA | Analysis and Results |
08-26-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160826_CL_PC02 | 8/22/16 | 33, 40-42 | CGCAAC,TGACGG,GGGAAC,GAAAAG | 9/12/16 |
Fall 2016[edit]
09-12-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160906_CL_PC03 | 8/29/16 | 34-36 | AACTGA,ATCGGG,CAAGCA | 9/27/16 |
10-18-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20161013_CL_PCC01 | 10/7/16 | 24,25 | ATTCGC,TACTGC | 10/20/16 |
11-10-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/18/16 |
11-17-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 11/21/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/21/16
|
12-05-2016[edit]
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 12/6/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 12/6/16
|