Daniel:Notebook/ComboLock/2017-2-14: Difference between revisions

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>Djacobse
(Created page with "=Beads Binding Test (Started Thursday 2-9)= Back to Calendar ==Positive Control Test== [[Daniel:Noteboo...")
 
>Djacobse
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{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="background-color:#B1A0C7;font-size:12pt;font-weight:bold" align="center"
|- style="background-color:#B1A0C7;font-size:12pt;font-weight:bold" align="center"
| width="85" height="45" | Master Mix NoX
| width="65" height="45" | Master Mix
| width="105" | Forward Primer Amt (10 uM)
| width="119" | Primer Pair
| width="105" | Reverse Primer Amt (10 uM)
| width="65" | Master Mix NoX
| width="85" | uL nfH2O
| width="65" | Forward Primer Amt (10 uM)
| width="105" | uL 2X Kapa SYBR Fast
| width="65" | Reverse Primer Amt (10 uM)
| width="85" | Total
| width="65" | uL nfH2O
| width="65" | uL 2X Kapa SYBR Fast
| width="65" | Total


|- style="font-size:12pt" align="center" valign="bottom"
|- style="font-size:12pt"
| align="center" height="15" | 73
| height="15"  valign="bottom" | MMT
| align="center" | 73
| align="center" valign="bottom" | PCCT-F/PCCT-R
| align="center" | 73
| align="center" align="center" | 11.2
| align="center" | 1168
| align="center" align="center" | 11.2
| align="center" | 1460
| align="center" align="center" | 11.2
|style="font-weight:bold" align="center" | 2774
| align="center" align="center" | 235.2
| align="center" align="center" | 280
|style="font-weight:bold" align="center" align="center" | 537.6


|- style="background-color:#BFBFBF;font-size:12pt" align="center" valign="bottom"
|- style="background-color:#BFBFBF;font-size:12pt"
| align="center" height="15" | 63
| height="15"  valign="bottom" | MMC1
| align="center" | 63
| align="center" valign="bottom" | primer24/primer4RC
| align="center" | 63
| align="center" align="center" | 11.2
| align="center" | 1008
| align="center" align="center" | 11.2
| align="center" | 1260
| align="center" align="center" | 11.2
|style="font-weight:bold" align="center" | 2394
| align="center" align="center" | 235.2
| align="center" align="center" | 280
|style="font-weight:bold" align="center" align="center" | 537.6


|- style="font-size:12pt" align="center" valign="bottom"
|- style="font-size:12pt"
| align="center" height="15" | 2.2
| height="15"  valign="bottom" | MMC2
| align="center" | 2.2
| align="center" valign="bottom" | primer6/primer12RC
| align="center" | 2.2
| align="center" align="center" | 11.2
| align="center" | 35.2
| align="center" align="center" | 11.2
| align="center" | 44
| align="center" align="center" | 11.2
|style="font-weight:bold" align="center" | 83.6
| align="center" align="center" | 235.2
| align="center" align="center" | 280
|style="font-weight:bold" align="center" align="center" | 537.6


|}
|}
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<li>72C 20 sec</li>
<li>72C 20 sec</li>
<li>plate read</li>
<li>plate read</li>
<li>goto b x24</li>
<li>goto b x45</li>
<li>72C 2 min</li>
<li>72C 2 min</li>
<li>16C hold</li>
<li>16C hold</li>
</ol></ol></ol>
</ol></ol></ol>
===Plate Layout===
[[Image:PlateLayout-20170214.png|600px]]


[[Category:ComboLock]] [[Category:20170209]]
[[Category:ComboLock]] [[Category:20170209]]

Revision as of 19:23, 14 February 2017

Beads Binding Test (Started Thursday 2-9)

Back to Calendar

Positive Control Test

Yesterday's results showed that the positive controls failed time and time again. Looking at the math again, by adding 2 uL 10 uM template to the positive control reactions, I was adding >100X the amount Kapa's protocol recommends. So this time I ran a dilution series that covers each of the positive controls in dilutions of undiluted to 1:10000.

  1. qPCR
    1. Make qPCR master mixes according to following recipes
    2. Master Mix Recipes
      Master Mix Primer Pair Master Mix NoX Forward Primer Amt (10 uM) Reverse Primer Amt (10 uM) uL nfH2O uL 2X Kapa SYBR Fast Total
      MMT PCCT-F/PCCT-R 11.2 11.2 11.2 235.2 280 537.6
      MMC1 primer24/primer4RC 11.2 11.2 11.2 235.2 280 537.6
      MMC2 primer6/primer12RC 11.2 11.2 11.2 235.2 280 537.6
    3. Add 48 uL of appropriate master mix and 2 uL sample according to plate layout
    4. qPCR Cycles
      1. 95C 3 min
      2. 95C 3 sec
      3. 55C 30 sec
      4. 72C 20 sec
      5. plate read
      6. goto b x45
      7. 72C 2 min
      8. 16C hold

Plate Layout

File:PlateLayout-20170214.png