Kun:LabNotes/CpgSeq/2009-6-9: Difference between revisions
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# targets found 34,695 45,422 | # targets found 34,695 45,422 | ||
[[ | [[Image:Cpg97k-endSeq-normalization-scatterplot.png|400px]] | ||
[[ | [[Image:Cpg97k-endSeq-normalization-ranked-curves.png|400px]] |
Revision as of 13:31, 9 June 2009
Data analysis of the end-sequencing results from the two Cpg97k captured libraries
- The pre-normalized and normalized libraries from NA21070 were prepared by Jie.
- The concentration was over estimated by ~10-fold, which led to only 1/10 of reads per lane than were expected.
Pre-normalization Post-normalization # raw reads 633,866 594,422 # mappable reads 516,594 429,326 # targets found 34,695 45,422
File:Cpg97k-endSeq-normalization-scatterplot.png File:Cpg97k-endSeq-normalization-ranked-curves.png