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=E-notes - Zhang Laboratory=
<strong>MediaWiki has been installed.</strong>
===Lab Meeting Schedule===
* [https://docs.google.com/spreadsheets/d/1EOfTShvUQMzO70nIcwbeNxiOVul-93HGuysJWIxaRHs/pubhtml# Lab Meeting Calendar-HTML]
* [https://docs.google.com/spreadsheets/d/1EOfTShvUQMzO70nIcwbeNxiOVul-93HGuysJWIxaRHs/edit#gid=0 Lab Meeting Calendar-Google Sheets]


===Lab Purchase===
Consult the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents User's Guide] for information on using the wiki software.
*[https://docs.google.com/a/eng.ucsd.edu/spreadsheet/ccc?key=0AhUen634IYdSdHRLYjBZWmNIMS1ybmdZZEZJbkdwamc&hl=en_US&pli=1#gid=49 Lab Ordering Form]
*[https://docs.google.com/spreadsheet/ccc?key=0AhUen634IYdSdDEtbnF3WVlheG8xd19DYnh0NjdoWGc Primer Ordering Form]
*[https://docs.google.com/spreadsheet/ccc?key=0ArhMnf_2MOucdFROTFdGSkhJdjBnbm9hU2lpM29vOUE Common reagents inventory]


===Investigators===
== Getting started ==
* [[Kun_Zhang|Kun Zhang]]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
* [[Alice Li|Alice Li]]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
* [[Alan Fung|Alan Fung]]
* [https://lists.wikimedia.org/postorius/lists/mediawiki-announce.lists.wikimedia.org/ MediaWiki release mailing list]
* [[Dinh Diep|Dinh Diep]]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
* [[Chris Wei|Chris Wei]]
* [https://www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki]
* [[Brandon Sos|Brandon Sos]]
* [[Matthew Cai|Matt Cai]]
* [[Andrew_Richards|Andrew Richards]]
* [[Ho Suk Lee| Ho Suk Lee]]
* [[Eric Chu|Eric Chu]]
* [[Blue Lake|Blue Lake]]
* [[Daniel Jacobsen|Daniel Jacobsen]]
* [[Song Chen|Song Chen]]
* [[Derek Gao|Derek Gao]]
* [[Yan Wu|Yan Wu]]
* [[Shicheng Guo|Shicheng Guo]]
===Alumni===
* [[Rui Liu|Rui Liu]]
* [[Nongluk (Noi) Plongthongkum|Nongluk (Noi) Plongthongkum]]
* [[Athurva Gore|Athurva Gore]]
* [[Tina Lo|Tina Lo]]
* [[Sam Chiang|Sam Chiang]]
* [[Jie Deng|Jie Deng]]
* [[Ylaine Gerardin|Ylaine Gerardin]]
* [[Jeff Gole|Jeff Gole]]
* [[Kyle Brubaker|Kyle Brubaker]]
* [[Robert Shoemaker|Robert Shoemaker]]
* [[Andy Chen|Andy Chen]]
 
===Sample record===
* [https://docs.google.com/spreadsheet/ccc?key=0ApnKSQ9Jqu6_dDBjUFFCYWt4S0xQZWhZVUZqYS1WdEE&hl=en#gid=11| Sequencing Samples]
* [[GA record|GA record]]
* [[Sample record|Sample record]]
* [[HUES | hES cell information]]
 
===Lab business===
* [[How to start in Zhang Lab| How to start in the Zhang Lab? Wiki and beyond. New member must read.]]
* [[Grant_proposals |Grant proposals.]]
* [[Lab_jobs|Lab jobs.]]
* [[Lab_freezers| Freezers assigned spaces.]]
* [[Lab_IT|Lab's computational resources]]
* [[Illumina_GA|Information on Illumina sequencing.]]
* [[Leica SP8 Confocal Microscope|Information on Confocal microscope.]]
* [[epMotion|Information on epMotion.]]
* [[Fluidigm C1| Information on Fluidigm C1.]]
* [[Shipping Information | Shipping Information.]]
 
===Lab Safety Information===
*For new lab members:
**download the [http://www-ehs.ucsd.edu/lab/new_worker_checklist.doc New Worker Checklist]
**go to [http://uclearning.ucsd.edu UC learning Center]
**register and complete these in class courses: RESEARCH SAFETY ORIENTATION; (If necessary then also complete BIOSAFETY: BLOODBORNE PATHOGENS and/or BIOSAFETY: VIRAL VECTOR)
**complete the online courses: UC Laboratory Safety Fundamentals
**complete the items on new worker checklist
 
*For existing lab members:
**complete annual refresher training every year before last year's completion date
**go to [http://uclearning.ucsd.edu UC learning Center]
#Login via Single Sign on or Active directory (your UCSD email user name only and password)
#Search for “IIPP”
#Click on "ANNUAL HAZARDOUS MATERIALS TRAINING"
#Click "Start" to complete the training
#Please print out the copy of your certificate after you are done
#repeat the same process for bloodborne pathogens and viral vector classes if needed
 
===Some handy tools===
* [http://excel2wiki.net/ SMD's Excel-to-Wiki Converter]
*[http://de.wikipedia.org/w/index.php?title=Wikipedia:Helferlein/VBA-Macro_for_EXCEL_tableconversion&action=edit&section=9 VBA-Macro for EXCEL tableconversion Instructions]
*[http://de.wikipedia.org/wiki/Wikipedia:Textverarbeitung/EXCEL-2003_Tabellenumwandlung_VBA VBA-Macro for EXCEL tableconversion ]
* [http://genome-tech.ucsd.edu/cgi-bin/myOligoTm.cgi  Kun's Oligo Tm Calculator]
* [http://genome-tech.ucsd.edu/LabNotes/GeneTool.zip GeneTool]
* [http://genome-tech.ucsd.edu/LabNotes/SeqScannerInstall.exe ABI SeqScanner]
* [http://genome-tech.ucsd.edu/LabNotes/PeakPicker.jar PeakPicker]
* [http://genome-tech.ucsd.edu/public/share/SSHSecureShellClient-3.2.9.exe SSHSecureShell]
* [http://arep.med.harvard.edu/kzhang/cgi-bin/primer3_www.cgi Kun's version of Primer3]
* [[Circos]]
* [[SNS|CNV calling on single-cell sequencing data.]]
* [[RNAseq_pipeline|Analysis of single-cell RNA-seq data.]]
* [[PISA| Feature (polony) identification in microscope images.]]
 
===[[Lab Protocols|Common lab protocols.]]===
===[[How to write manuscript]]===
===[[Media: 503335a.pdf| Tips for interpreting scientific claims]]===
 
===About wiki===
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://www.shawndouglas.com/wikifarm/ Wiki admin information]
__NOTOC__

Latest revision as of 05:03, 4 December 2024

MediaWiki has been installed.

Consult the User's Guide for information on using the wiki software.

Getting started[edit]