Rui:LabNotes/SingleCell/2011-5-17: Difference between revisions
>RuiLiu (Created page with '==Sequence result== Continue with lab note on 5.16.11 RNA-1: poor quality; first 60bp match to intergenic region with 88% >RNA-1-M13R_F01.ab1 NNNNNNANNNTGNNNNNNGCTCGGATCCNCTAGTA…') |
>RuiLiu |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
==Sequence result== | ==Sequence result== | ||
Continue with lab note on 5.16.11 | Continue with lab note on 5.16.11 | ||
===RNA sample Hues54=== | |||
* 15 colonies directly for TempliPhi, roughly ~500ng/ul in 10ul PCR, 3ul sending for sequencing (M13R provided by Genewiz) | |||
* No priming: 3 | |||
* mRNA: 11 | |||
* Potential non-coding region: 1 | |||
RNA-1: poor quality; first 60bp match to intergenic region with 88% | RNA-1: poor quality; first 60bp match to intergenic region with 88% | ||
Line 23: | Line 30: | ||
AGGAGCGGCTGTACCCGCTGCGGAAATACCCGGTCAAGGNCTGAGGGGCGCATTGTCAATAAAGCACAGCTGGNTGAGAA | AGGAGCGGCTGTACCCGCTGCGGAAATACCCGGTCAAGGNCTGAGGGGCGCATTGTCAATAAAGCACAGCTGGNTGAGAA | ||
A | A | ||
RNA-3: "poor quality; spliced form of BQBP1, 98.4% | |||
>RNA-3-M13R_F03.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNCTNNNNATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA | |||
CTNNNGGGGGANCCTTTTTTTTTTTTTTTTTTTTTTTTTCCCNNGANANGNTCTGNCAGGGATCGAGAGCGTGGNTATGA | |||
CAAGGTAGACAGANAGAGAGAGCGANNGNNNNAACGGGATCGGGACCGCGGGTATGANAAGGCAGACCGGGAANAGGGCA | |||
AAGAAGGGCGCCCCCATCGCCGGGAGGAGCNGNCTCCCTATCCCAAGAGCNAGAAGGCAGTAAGCCGAAAGGATGAAGAG | |||
TTANACCCCNTGGACCCTAGCTCATACNCNNACGCCCCCCGGGGCNGTNGNCAACAGGANTCCCCAAGNGGAATGAGGCN | |||
AAAAN | |||
RNA-4: PQ; MTF1, 98.6% | |||
>RNA-4-M13R_F04.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNTCGGATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACTA | |||
NAGGGGNNNCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGCCGACAAGCAGAGACTCCTTCAGACCCTCAAAC | |||
AGAAACATTAAGTGCCATGGATGTGTNAGAGTTTCTNTCCCTCCAGAGCCTGGACACCCCGTCCAATCTGATTCCCATTG | |||
AAGCACTACTGCAGGGGGAGGAGGAGATGGGCCTCACCAGCAGCTTCTCCAAGTNAAGGGCCCATGTGTGCTCCCCTCTG | |||
GGAAAAGCGGGTGAGCAGGAGGCATGAGGTACAATGCCTGCCATCATGGGTCAAAAATTTGAAGGATGAAAAAATCTACT | |||
GTTTGAAATCCTCACCTTTTAGACGTATTTTTTTTATTCAN | |||
RNA-5: PQ; SNX9, 99.5% | |||
>RNA-5-M13R_F05.ab1 | |||
NNNNNNNNNNNNNNNNNCNNANNNNNNNNNCACNANTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC | |||
TATANNGNGNGNNTTTTTTTTTTTTTTTTTTTTTTTAACAGGNNCNNGNNACACCGTCAGCTCGAACTCAACACTGGCAG | |||
CCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCCTCCCGCTGCTTTCATTTTT | |||
CTGACCTAATAATTACGGGAAANGGAAAGTCTGGGCCANCANCNATAAAATGACACCAAAAATAAGTANANGANATCGAA | |||
T | |||
RNA-6: no priming | |||
RNA-7:PQ; CR594125, 94.6% | |||
>RNA-7-M13R_F07.ab1 | |||
NNNNNNNNNNNNTGNNNNNAGCTCGNATNNNNTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT | |||
ANNGGGGNNNCCNTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCCCCGTGGTTTAATATGAACAGAGTTGAATATGACAT | |||
TGTCTGACAAAAGAATGAACAATTTGCTGAATAAAAGCCCCAAGTCAGGATATATACACAGAAGAAATGGAGCCTCAGAG | |||
TCTCAGCACTTGTGCNCAATGAAAGGAGAAATCTTTAAAAAAAAAAATCTGTAACAGAGGATAAAAATCAAAAGGCAGCA | |||
AGGACACCGACACTGGNGAGGTGGGAAAGGGGCTNNTCANCTACCAGCATGGGCTCNNCNGCTAGAGAGCTAACCNATNT | |||
CAAGGATTTTCAACNCTGAGGTGGGTTCCANNTCCCCTGNN | |||
RNA-8: spliced NUCKS1, 99.7% | |||
>RNA-8-M13R_F08.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNTCGGNNCCNCTAGTNNCGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT | |||
ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTCGAACTGCCATAGTCACTATCGTCATCATCTTCCATTAGGAAAT | |||
CTTCATCGCTGCCGGAATTCTCCTGGAATGGTGCCTCATCCTCCTCTTCTTGTTCTTCCTCACTGCCCACATCTTCCATG | |||
AGCATCTCTCTCTGTTTAGAAGCTGCTTTCGATGCCGCCTGCCGTTGTTGGCGCACATTTTTATGATCTTCTTTTTCATC | |||
TTCACTATCCTCTGCTGAGTGAGAATCATCCTTCTTGGTCTTCACATCTTTGTCTTCTGAGTCCTCACTATCTTCCTGTG | |||
AATTCTTTCCAGATCGCCTCTTATTTTTAGCTTCTCGGGGAGATGATCGAATTTTCTTAGTGGGAGGGCCCGAATCTCTT | |||
CCATAATCTTCATCTGCNTCATCAGATTCCTGAAACTGTGAGTAATCAACAACCTTCCTATTTCTGACAGGCCGCGACAT | |||
GTTCGCTGTCGAAACAGGACCGAGTCGAGAAGCCAAAGACCAGGACCCCCCCTACCCCGCGCGCTCGGCGCCCCACCCAA | |||
AANNNANNNAAANANAAAAGGGATACCCCTATNNNNNNTCGTATTNAAGCCNNNNNNNNGCAAGATATCCATCACACTGG | |||
NCGGCCGCTCGAGCATGCATCTAGAGGGNCCCAATTTCNCCCCTAT | |||
RNA-9: no priming | |||
RNA-10: spliced EST, 99.0% | |||
>RNA-10-M13R_F10.ab1 | |||
NNNNNNNNNNNNGNNNNNNNNNNNNCNNNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA | |||
CTATNGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCCTAGCTCATCCTGGCTCAAAAAGCACCCCCACTGA | |||
GCACCTTGCGACCCCCACTCCTGCCCGCCAGAGAACAAACCCCCTTTGACTGTAATTTTCCTTTACCTACCCAAATCCTA | |||
TAAAACAGCTCCACCCCTATCTCCCTTCACTGACTCTCTTTTCGGACTCGGCCCCCCTGCACCCAGGTGAAATAAACAGC | |||
CATGTTGCTCACACAAAGCCTGTTTGGTGATCTCTTCACATGGATGCACATGAAATTTGGTGCTGTGACTCAAATCGGGG | |||
GACCTCCCTTGGGAGATCAATCCCCTGTACTCCTGTTCTTTGCTCCATGACAAAGATCCACCTATGACCTCAGGTCCTCA | |||
GACCAACCANCCCAAGGAACATCTCACCGATTGTAAATCAGGTGAAGTATGAAGTTATGAGGAGAAAGGAACAGAGGACA | |||
ACCACACAGAGAAAGTGTAGCTTTATCTACTAGAGCTGAAGACATTCAAATTTATGATCCAACAATTCTACTCTGAAGTG | |||
CAGTGGTGNATATACTGCAACAATGTGTACTCATGTGCCCTGAGAACTANNNNTGAAAAAAACCTTACAGCAATATGCNT | |||
AATANNNNNNAAAAAAAAAAAAAAAAAAAANGGGATNCCCCCTATNGNNGNNTCNNNNTTAAAGCCAAATTCTGGCNGAN | |||
ANTNCNTCANN | |||
RNA-11: PQ, CMTM3, 97.5% | |||
>RNA-11-M13R_F11.ab1 | |||
NNNNNNNNNNNNNNNNNNNANCNNNGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTATACGACTCACTAT | |||
AGGGGTANCCTTTTTTTTTTTTTTTTTTTTTTTTTGTCAGTCTGGCTTAATTCATTATGGCTTTTTTTCAGGGTAAGAAA | |||
TTCACACCCAAGAGAATAAGGCTACAAATGCTCCAAACATGGGTCCAGAACTCCGGCTCTTTTGTGAGGCCTAGAGTCAC | |||
AAAAAATGCCATCTGTTAAAAAGCTGCCTTTGCATAAAAAAATATAAAAAGTTACAAAATTCCATCAAAGACAGATACAC | |||
AGTATAAATCGTTAGGTGAACACAGAAAGCTGGTCTCATCTCCTGCAGTGGCCCATAAACCTGCCCTGANGTCTGGAAAT | |||
TCACTGTCCTGAGGGTCCAGGAACTCCTGCCTGCTGGCTGGGCTCTAGGAAGAAGGAGGGTTTGGCTGGGCCTGCCCAGC | |||
TCCCCATGACACTGTCACTGTGATGCCACTGTTGTACCCTCTGTCTTCTGGACCAGTCAGTCTATGAGCTCTTCTTTGAA | |||
ACAGTCGTAGACCCAGAATGGTCATCTCACCCCCAGAANACATGGTTTCCAAGGGTGGGAGGTGTTAGTTATGGGTGCCG | |||
AGCCCCACTTCCTGGGCGACAAGGCAAAAGGTCAATTTCCCCCTGCTTCAAGAATGAAGAGGGAACTGAAAAAAAAAAAA | |||
AAAAAAAAAAAAAAGGATACCCCTAANANTGAGTCNTATTAAANCCGAATTCTGCAANAATCCATNACNANTGGNGGCNG | |||
CTCGAANNNGCATTTAGAGGGNCCCNATNTCGCCCCTATANTGAGGTCNNAATANNAANTCACTGGCCCNTCNTTTTAAC | |||
AACNNTCNNTGNANNGGGAAAAACCCTGGCNGTTANCCCAATNTTNANTCGCCCTTGNAAGCANNNNCCCCCCTTTTNCC | |||
AGNCTGGGNGTAATAACCGAAAAGNNCCCNCANCNNNNCGCCCNTTCCCNANAGTTGCGCNACCNGANANNGNNAATGGG | |||
NCNGCNCCCNGNNNNCGGCGNNNTTATANNNNNGNNNNNNNNGN | |||
RNA-12: PQ, HN1, 98.9% | |||
>RNA-12-M13R_F12.ab1 | |||
NNNNNNNNNNNNNNGNNNNNNNNNNTCGGANCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC | |||
ACTNNNAGGNGATNNTTTTTTTTTTTTTTTTTTTTTTTTTTTACNNGTCCTAAACTACTAAACCTGCATTAAAAATTTCG | |||
GTTGGGGCGACCTCGGANCAAAACCCAACCTCCGANCAGTACNTGCTAAGACTTCACCAGTCAAAGCGAACTACTATACT | |||
CAATTGATCCAATAACTTGNCCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATTCTATTCTAGAGTCCATATCAAC | |||
AATAGGGTTTACGACCTCNATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATT | |||
AAAGTCCTACGTGATCTGAGTTCAGACCGGAGNAATCCNNGTCGGTTTNTATCTACTTCAAATTCCTCCCTGTACGAAAG | |||
GACAAGAGAAATAAGGNCTACTTCACATAGNGCCTTCCCCCGTAAATGANATCATCTCAACTTAGTATNNTACCCACACC | |||
C | |||
RNA-13: no priming | |||
RNA-14: PQ, spliced TVC (truncated?) 87.6% | |||
>RNA-14-M13R_G02.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNTCGGNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT | |||
ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGTACTGTGCTTTTATTAAAAAACAAAACAAAACAA | |||
AAAAAATACAATCAGGTACTGTCCAGACANGTTTGGGAAGGGAAAATCTCTTTTAAAGTCCTCAGTTTTCATCATCACCA | |||
TCACCATTATTATATTAATAATATTAATGTCCTTGAAATTTAAACAATATCACTTTTCTGGCTTCAGTTGTAGGAAATGT | |||
ACAAAACATCGAGGGTGGGGGTGGGGCAAGGGGTAACTTCCAATGACACAAGTTTCATCTTTGTGACCTCAACCAATAAC | |||
AATTGNACAGCTTTGTGTAAAACACAGCTGGCTCGGAGAATGACCATGTCCCCTGTATGGCCAGCTTGCCCCTCTCCCAT | |||
TCCCAGAGCCACCCAAGAGAAGTAAAATTCATGGTGTTGCTGTCACTAGGAGACTTTGCTCAATCGAACAAAAAAGTAGA | |||
AACTTGTAGACTGTTGTCTTTGGTGCAAAGGAAGTCGTTGCAGAGGGGCCTACCTCAGTGCCTCAGTGATCCGTGTGGTC | |||
TGCTTGGACGCCCATCAAATGCCCAAGGAGAGCTTCNNTGTNNNNNNTGGNTGTGTCGATGCTTTGGNAAAAATCCTTTC | |||
TTTTCTCTGGGGCCCCATTCCCTCTCTCACCNAATTATCCCTGGAATTTATGCCCNGCTTACGCCTGCCNTTCNANATTT | |||
CGGGAAGTTGCTGGGTNCTCAANTTTCANCTCACAAACTGGANTTGAGTACTCATGGCCCNTTNCAANNGGNAANCNAGT | |||
NTAANGCCCCTGACTGTNNATTATNGNNCCATATCTGCCCCATCAGGNNNCNCGATGACANTTCNNNAAAAAAAAAAAAA | |||
AAANNANAANAAAAANNGTNACCCCCTANNNNNAGTCTANTTTAAAGCCCNAATTCTCNGCNAAATANNNNTNNNNNNNG | |||
CNN | |||
RNA-15: spliced and truncated PCNA, 88.4% | |||
>RNA-15-M13R_G03.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNGNNTCGGANCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC | |||
ACTANNNGGGNTCCTTTTTTTTTTTTTTTTTTTTTTTTACTTTNAAANTTGTTAACTTTATTTAAATTGTACAATATTTC | |||
TTAAACTGCATTTAGCGTCAAGATCNNNNNNGAGAATCACCAGTATTTGTAAAGCAGAAACATTCATGTTAACAAAACTA | |||
GTTTTTACTTTGGAGCTTATTCTTTAAGCAAATTATGGAGAATGGAGAGAAAAGAAAGTAGGTTATTTACAGAAGATATC | |||
TACATATTTTATTTTAATATTTAAGAATACTCAGGTACAAACTTGGTGACAGAAAAGACCTCAGGACACGCTGGCATCTC | |||
AGGAGCAATCTTCAAAGGTTTAGTTTTCTCAATTTCTAGCAATGCCTAAGATGCTTCCTCATCTTCAATCTTGGGAGCCA | |||
AATAATACTTTAAGTGTCCCATGTCAGCAATTTTATACTCTACAACAAGGGGCACATCTGCAGACATACTGAGTGTTACT | |||
GTTGNAGACAGTGGAGTGGCTTTTGTGAAAAAGTTCAGGTACCTCANAGCAAACGTTAGGTGAACAGGCTCATTCATCTC | |||
TATGGTTACCGCCTCCTCTTCCTTATCCACATTGCTTGTTTGTGACAACTNCCATGTTCCCGTTGCCAAGCTCTCCACTT | |||
GAAGAAAACTTAAAAAAAAAAAAAAAAAAAAAAGGATANCCCTANANNGAGTCNNATTTAAAGCCNAATTCTGCANATNN | |||
===DNA samples=== | |||
* 15 colonies directly for TempliPhi, roughly ~500ng/ul in 10ul PCR, 3ul sending for sequencing (M13R provided by Genewiz) | |||
* No priming: 1 | |||
* Vector seq: 3 | |||
* Non-coding region with poly A/T: 10 | |||
DNA-1: vector seq. no A tail | |||
>DNA-1-M13R_G04.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNCTCGGATNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCACAC | |||
TGNCNNCCGNNCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTT | |||
ACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTA | |||
ATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGGCG | |||
CATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCT | |||
TTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATT | |||
TAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGG | |||
TTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATC | |||
TCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGGTTAAANAATGAGCTGATTTAACAAAAATT | |||
TAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAACG | |||
GTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCANGTAGCTT | |||
GCAGTGGGCTTACATGGCGATAGCTAGACTGGGCGGTTTTATGGACAGCAAGCGAANCGGAATTGCCAGCTGGGGCGCCC | |||
TCTGGTAAGGTTGGGAAGCCCTGCANNACNGNNGNTCTGCNCAGNNNNGNNGNNNNNNNNNNNGNNGGNNNGGGGNANNA | |||
NNNNTCTNNAANAANNANNNGNGATGNNNGNTNNNTTTCNNATNNANNGAAANAANNNNGATTGCACCGCNGGTNNCNCC | |||
NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNACNGGGNNNNNN | |||
DNA-2: vector; no A tail | |||
>DNA-2-M13R_G05.ab1 | |||
NNNNNNNNNNNNNNNNNNNNAGCTCGGATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCACAC | |||
TGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTT | |||
ACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTA | |||
ATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGGCG | |||
CATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCT | |||
TTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATT | |||
TAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGG | |||
TTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATC | |||
TCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGGTTNNAAAATGAGCTGATTTAACAAAAATT | |||
TAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAACG | |||
GTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCNNTAGCTTG | |||
CAGTGGGCTTACATGGCGATAGCTAGACTGGCGGTTTTATGGACAGCAAGCGAACCGGAATTGCCAGCTGGGGCGCCCTC | |||
TGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCNGCCNGGATCTGATGGCGCAGGGGATCANATCT | |||
GATCAGAGACAGGATGANGNNCGTTTCCNCATGATTGAACAAGAATGGATTGCNNNNANGGTNNNNCNNNNNNTTNGGNN | |||
GNNANNGCTATNNNNNNTANNNNNN | |||
DNA-3: Intergenic region with 20bp poly A | |||
>DNA-3-M13R_G06.ab1 | |||
NNNNNNNNNNNNNNNNCCNAGCTCGGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT | |||
ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGAATTGTACTCCCATAATTCCCACATGTTGTGGGAGAGA | |||
GCTGGTGGGAGATAATTTGAATCATGGGGGTGGTTTCCCCCATACAGTTCTCATGGTAGTGAATAAATCTCATGAGATTG | |||
CATGGTTTTATCAGGGGTTTCTGCTTTTGTATCATCCTCGTTTTCTCTTGCCACTGCCATGTAAGAAGTGCCTTTCGGCC | |||
GGGTGCAGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCGATACC | |||
CTCCTGGCTAACACAGTGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGTGGGCGCCTGTAGTC | |||
CCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACG | |||
GCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGATACCCCTNATAGTGAG | |||
TCNNNTTAAAGCCGAATTCTGCANATATCCATTCACACTGGNGGCCGCTNGAGNNTNCCNTNTAAAAGGGCCCAATTCNC | |||
CCTANANTGAGTNCGTATTAACAATTCACTGGCCGTCGTTTTACAACGNCGTGACTGGGAAAACCCTGGCGTTTCCCCAN | |||
CTTAATCCGCCTNGCANCACATCCCCCTTTCGCCAGCTGGGGNAATANCGAAANANGCCCGCACCNNTNNGCCCTTCCCA | |||
ACAGTTGCNCANCCTGAATGGNAAANGGANNGCNNCCCTTGTAGCGNNN | |||
DNA-4: intronic region with 40bp poly T | |||
>DNA-4-M13R_G07.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNNAANCTNGNNTCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGAC | |||
TCACTATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTATCAGAAGCAAAACCACAAAATCCTCACTCTCAAGGAAT | |||
GCACAGGCTATTGCAGAAGCCAGGAAGAAATCTATATTATTACAGAGTACTTATCTCAGAGGGTTGTTATAAATATTAAA | |||
TGAGAGTTATTTTATGGAATACATCTGATCTAGTGCCTGGCACATAAAAAGTGTTATATAAGTATCAGCTATTGTAATTA | |||
CAGAGTGACAAATAAAAGGTCGGAGTGCTATGGTTATGGAATAGAATGATGAGAAAGGAAACTTCCAGGAGCTTAGGTGT | |||
ACTTTAAGTGCAGGTATCAAATATTGATGCTTCATTATGGCAAGGGGGCTAACAAGTTGCCAGTGTGTCACAAGTCAACA | |||
TGCAGGCAAAGATGGAAACATTTTCCAGATCTAAAATGTAGTTAAATATGTTGTACTTTGGAATTGTATATGAACTTTAT | |||
TCCCCTTTCAGAATTACAAATCTCTTAGAAAGCCATTTTATTTCTTTCTGAAACTGAGTTATGATCATCTACTATTTAGC | |||
ACAGAAATAAAAGGGAGGGATAAAATCTACCAACCCAGCAAAGACACATCTTGCTTNNNNNNNTCTTGAGGAAGGCCTTC | |||
AGCAGAATGGAAAGATGACTCTCTGTTGATTACTCTATGTTGAGAACCTTAAGATTCAGATGGTATAGGATTCCAGCTAG | |||
GCAGTTGTGAACTGTCCATTTGTCTTATGCAAGAAAGTCTCNTTCAGCTTTCTGAACTTTTCTGTATTTCACATACTCAT | |||
TTCTAGTTCATGCTCATGTTCAAAGCTTGCTAGAATAGCATGAAAAAGTTTCCAAAGTAAACTCAGCATACTCAAANNTT | |||
TTTCTAGGNTTATTATCTNNNNNNGGAAAGGTGAAAAGANAGCTTGCNTTTANTTTTAAACNCTTACNNNNNNNNAAAAT | |||
ANNNNNCNCTGNCANNANNNNNAAANTGACTGGNNNGNGNNCNNNCNNNANCCAGNNNTTGGNGCNANGNNGGCNNNNNN | |||
N | |||
DNA-5: intronic region with 30 poly A | |||
>DNA-5-M13R_G08.ab1 | |||
NNNNNNNNNNNNTNGNNNNNNNNNNCGGATNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA | |||
CTATANGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTACTCTTTGAGATAATACAACTGGCACAGAAAAATAAGGAGGA | |||
ACAAGAGAAAGAAAATTCCTTCAAAAGAAAGAATATATACAAAGACTCTGAGGTGGAAGAGATTGGCCTTTTCAAGAAAT | |||
TAAAAGAAAATCCACGTGACTAAAGCATAATGAGCAAAGGAAAGCCCAGTCAACAGGGGCAGATTATATAAGGTCTTGGA | |||
TAAATAGTGTCTATTTCATTCAAAGTATAATGGAAAGACACTGGAGGGTTAAAGCAAGGAAGTAAAATCATCGAATTTAC | |||
TTTTTTCTTTTTTAATTCATGAAGCTATACTGTGGAGAATGGATTATAGACGGGTTAAAGAAAAACAATGAGGCCGGGCA | |||
CAGTGGCTCATACCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACGAGGTCAGGAGACCAAGACCATCCT | |||
GGCCAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTGATCCCAGCT | |||
ACTCAGAAGGCTGAGGCAGGAGAATCNTCTGAACCAGGGAGTCGGANATTGCAGTAAGCCGAGATCATGCCACTGCACTC | |||
CAGCTTTGGCAACAGAGTGAGACTCCCATCTCNAAAAAAAAAAAAAAAAANAAAAAAAANAAAAGGATACCCCTNTAGNG | |||
AGTCGTATTNAAGCCGAAATTCTGCANATATTCCATCACACTGGGNGG | |||
DNA-6: interginc region with 30 poly A | |||
>DNA-6-M13R_G09.ab1 | |||
NNNNNNNNNNNNNNNNNNNNAGCTCGNNNCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC | |||
TATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAACTAAAATGAAATATTATCTCCCCCCAGTTAAAATG | |||
GCTTTTATCCAAAAAACAGGCAATAACGAACACTAGAGAGGATGTGAAGAAAAGGGAACCCTCGTACACTGTTGTTGGGA | |||
ATGTAAATTAAGACAACCACTATAGAGAACAGTTTGGAGGTTCCTCAAAAAACTAAAAATAGGGGTCCAGCACGGTGGCT | |||
CACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGCTCACAAAGTTAGGAGATCGAAACCATCCTGGTTGACA | |||
CAGTGAAACCCCGTCTCTACCAAAAACACAAAAAATTAGCTGGGCATGGTGGCAGGTCCCTGTAGTCCCAGCGACTCAGG | |||
AGGCTGAGGCAGGAGAATGGGGTGGACCCGGGAGGCAGAGCTTGCAGTAAGCTGAGATCACGCCACTGCACTCCAGCCTA | |||
GGCGACAGAGCGAGACTTGGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGATACCCCTATAGTGAGTCGNATTAAAGCCN | |||
AATTCTGNNAANATCCNTNACACTGGCGGCCGCTCGAGCATGCATCAAAAGGNNNCNAANTCGCCCTATNNNGANTCGNA | |||
TTNCANNTCACTGGCCGTCGTTTTACAACGTCNNACTGGNAAAACCCCTGGCGTTACCNAACTTAANNNNCTTGCAGCAC | |||
ATNCCCCCTTTCCNCCNGNTGGCGTTATANCGNAGAGGCCCNGCACCGGATCNCCCNTTCCCAANANTTNGCNNCNACCC | |||
TG | |||
DNA-7: interginc with 15 poly T | |||
>DNA-7-M13R_G10.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNNNNTCNNNNCCNNTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC | |||
ACNANNGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTAAGTATATTTTAAATATCCTAAACAAAATATTAGC | |||
AAAGTGAATCTAACAAACATACTTAACATTTTGTTGAGAATATTCTTATAGAAAGAATAATACACCACAAACAAGTGGGA | |||
TTTATTTCAGGGATGCAAGGCTGGTTCAACATTTAAAAATCAGTTAATGTTATCCATCACACCAACAAGCTAAAAAGGAA | |||
CAGTCATATATTCATATTAATAAATGAAGAAAAAGCAGTTGAAAAAATTCAACATTCAAGATTTAAAAAACAACAAATTA | |||
GGAGAGGACTTCCTCGACTTGTTAAGGAACATCTATAAAAAACCTATAGCTAACATCATATATAATGGTGAGAAACACAA | |||
ATCTCTTACATTAAGATCAGGGAAAAAGCAAGACTGTTCTCTGTCCCCACAGCTTTTCAACATTATATAGGAAGTTTAAG | |||
CTAATGCAATGAAAAAGAAAAGAAAAGGTAGATAAATTGGAAAAGGAGAAATTAAACTGTCTTTGTTTTCAGGTGACATA | |||
TTTACCTATGGAGAATATCCAAAGAAGCTGACGAGAAAAAAAACCTGAAACCCATAAGCAATTAGGTTTCAGGATAAACG | |||
GTTAATGTACAAAAGACAATTACTTTTTTATGCACCATCAATGGAAAATGAGACTTGAATTGTAAAATACAGTATCACTC | |||
ATATTAGCACCCAAAAATGAATAGAAANTAAATCAAGCAACATATGTACNAGATCTATATGAGAAAAACTATAAAAATCT | |||
GANCAAAAATATATCTAAGAAGAANCTAAATAAANNAAGAGAGTCCATGNTTCATGGANNAGAAANGACTAAANATNGTC | |||
AACTTGTCAGTTTCCNTNCCNNACTTGATCTACAGACNTNCACAAAAATCCTNCAGTCNAAAACCNNNCANCAAANTNTT | |||
NNNNNNNNNNNNNCCNNNNNAANNTGGATNCCNNNANNNNNATNNNNNNNAANANNCNGNANNNGCTNATNCNANACTNA | |||
AANNNNNGNAAATNNNNNNNTNNNN | |||
DNA-8: intronic region, 16 poly A | |||
>DNA-8-M13R_G11.ab1 | |||
NNNNNNNNNNNNNNNNNNNNGCTCGGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT | |||
ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTCGGCATTTCGGAGGCCTAGGTGGGTGGATCACTTGAGGTCAGGA | |||
GTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCATCNCNACTAAAAATACAAAAATTAGCAGGGCGTGGTGGCAGGCC | |||
CTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCGGAGGTTGCAGTAAGCTGAGAT | |||
TGCACCACTGAACTCCAGCCTGGCTGATAAAACAAGACTTCAACTAAAAAAAAAAAAAAAAAAANAAAAGGATACCCCAA | |||
TA | |||
DNA-9: intronic with 25 poly T | |||
>DNA-9-M13R_G12.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNCNNGNATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC | |||
TATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTNGGTCTGTTGCCCAGGCTGGAGCACANCGGC | |||
NTGATCCTGGCTCACTGCAGCCTCCACCTCTGAGGTTCAGCAATTCTCCTGCTTNNGCTTGAGTAGCTGGTACTACAGGN | |||
ACATGCCACCATGCCCAGCTAATTTTTGTATTTTTGGTAAAGACAGGGTTTCGCCATGTTGGCCAGTCTGGTCTTGAANN | |||
CCTGACTTCAAGTGATCCACCAGCCTCAGCCTCCCAAAGTGG | |||
DNA-10: no priming | |||
DNA-11: intergenic with 22 poly A | |||
>DNA-11-M13R_H02.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNNGNNTCGNNNNNCACTAGTAACGGCCCGCNNAGTGTGNTGGAATTCGGCTTTAATACG | |||
ACTCACTNNNGNTNNTNTCCTTTTTTTTTTTTTTTTTTTTTTTTTATCTTCTGTTATAGTCACAATAACATGTTATGCCT | |||
TTGCTTGTATGTTCATCTCTCTCTGTGTACTAGCAGTCCATCCTAATAATGATCTTATCATCTGGAATATAATTGAATAT | |||
TACAATTGAGAATAAAATAGATTATCCAGATTATTTCAGTGAATATAAGTCTAGCTGACTAAGAGGGAAAAATAATTATA | |||
GATACCGTGACATCCCCACACCAACTTCTTGTAACAATGAGATGAGTGAAACTTTAATGAAACAGTGTTATCATCAAAGA | |||
CCTGCCAACCTAAAATTATCTGTTTTGATGAATTGTCATTAAATAAATGAAGACGCCAAAATAAAGATATTTTATACAAA | |||
AACTAAATCCCTTATTCCCTCAGAGAGTTTGTAGGTTTCATTCCAAAAAGCCACAATAAAGTGAATATTGCAATAAAGCA | |||
AGTCACACAAATTTTTTGGTTTCCCAGTGCATATAAAAGTTATGCTTGGGGCTGGGCACGGTGGCTCACGCCTGTAATCC | |||
CAGCTCTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCNNNNGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGT | |||
CTCTATTGAAAATACAAAAAATTAGTCGGGCGCAGTGGCGGGCGNCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGA | |||
NAATGGTGNCAACCNGGGGGGCGGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGTGACAGANCGAG | |||
ACTGCNTCTCNAAANAAAAANAAANNANAAAAANGNNACCCCNATAGNNGNGTCGTATAAANNCNNATTCTGCNNATNTC | |||
ATTNNCANNNNCGGNCNGCTCNAGCATGCATCTAGAGGGCCNAATTNNNCCTNTANNNAGTCGTATTANATTNACTGGCN | |||
GTNNTTTTANNANNGTNNNNGACNNNGGAAAANCCTGNNN | |||
DNA-12: intergenic with 23 poly T | |||
>DNA-12-M13R_H03.ab1 | |||
NNNNNNNNNNNNTNGNNNNNNNNNTNGNNNNNNNANTANCGGCCGCCNGTGTGCTGGAATTCGGCTTTAATACGACTCAN | |||
NNTANNGGNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGANACAAGAGTNTCCCTCTGTCATCCAGGCTGGAGTGCAGTG | |||
GCGTGATGTTGGCTCACTGCAACCTCTGCCTGCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCTGAGTAGCTAGGATT | |||
GCAAGCACATACCACCATACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCT | |||
CAATCTCTTGACCTCGGGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACACGCNTGAGCCACCATGCATGGCCA | |||
AAAGCTGCTACNTCTAAAGGTGTTTCTTAGAAATAGCAAAGNANTATAGCCAGGAAAAACAATTACAACAGCCACAAACT | |||
CTAN | |||
DNA-13: vector seq. | |||
>DNA-13-M13R_H04.ab1 | |||
NNNNNNNNNNNNNNNNNNNNNNNNCTCNNNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCAC | |||
ACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTT | |||
TTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCG | |||
TAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGG | |||
CGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCG | |||
CTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGA | |||
TTTAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGAC | |||
GGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTA | |||
TCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCNNTTGGTTAAAAAATGAGCTGATTTAACAAAAA | |||
TTTAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAA | |||
CGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCANGTAGC | |||
TTGCAGTGGGCTTACATGGCGATAGCTAGACTGGGCNGGTTTTATGGACAGCAAGCGAAACCGGAATTGCCAGCTGGGGC | |||
GCCCTCTGNTAAGGTGGGAAGCCCTGCAAAGTAAACTGGAATNGCTTCTTGCCGCCAAGGATCTGATGGCGCANGGGATC | |||
AAGAANCTGATCAANNANANNGNATGANGNATCGTTTCGCATGAATGAANAANAATGGAATTGCNCNCAGGNTNNNCNGN | |||
N | |||
DNA-14: intergenic region with 16 poly T/G | |||
>DNA-14-M13R_H05.ab1 | |||
NNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNTCCACTAGTAACGGCCGCNAGTGTGCTGGAATTCGGCTTTAATACGA | |||
CTCACTATNGGGGNNTCCNTTTTTTTTNTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCCCCAAGTTGGAGTGNNN | |||
TGGCCCGN | |||
DNA-15: intergenic region | |||
>DNA-15-M13R_H06.ab1 | |||
NNNNNNNNNNNNNNNNACNAGNNNGGANCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCNCN | |||
NNANNGNNNNGCNTTTTTTTTTTTTTTTTTTTTTTTCTCNGCNANNACCNNNAAATATCATGGTCTCTGGCAAGATGTCC | |||
AAAATCTGATTCAGGTCTTCCGGTCAGTCGTAGCCAGCTATCA |
Latest revision as of 21:39, 17 May 2011
Sequence result[edit]
Continue with lab note on 5.16.11
RNA sample Hues54[edit]
- 15 colonies directly for TempliPhi, roughly ~500ng/ul in 10ul PCR, 3ul sending for sequencing (M13R provided by Genewiz)
- No priming: 3
- mRNA: 11
- Potential non-coding region: 1
RNA-1: poor quality; first 60bp match to intergenic region with 88%
>RNA-1-M13R_F01.ab1
NNNNNNANNNTGNNNNNNGCTCGGATCCNCTAGTAACGGCCGCCNGTGTGCTGGAATTCGGCTTTAATACGACTCACNNN
NGGNGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTCCNCNGGAANAANTGCACCTGTGTCGCCNTCCCACAGGGGAACTC
GGGAGACAAAGGCGCTTTGNCNCNTCTGGGGGANCCTATCAGGACCAATTCCCATGGCGAATACCATGATATCGTCCGTN
ACTGGGGGGANANTGACNTGGNTCCNAANACTGNGGNTCGGCCCGATNTTTANAAAAAAACNAACGCTAAANAAAATTGA
CAATTCCAAATTAACCGGTTCCCCGTAGANCTTTCGGGGGNGGGGANCNGGGGANNNNNNNGGNCTTTCCNNCNNCCANA
ANAAAAAAGAAAGGGACGGGCCGGGGAAAGGCCGGNGAAACAGGCNATAGNNCCTAGGACANTGNNNATGATNAAGACCG
ACTAATGGGGGCTGCGGNCCCGTGTGTANGNGTCAGGCTGTTTCTTTTGGNANGAAGAGGGGTGGTCTTTCATANAATTC
GGTGGGGGGTGGGCTCGGAGAGGGTCTACTTTGTGGAGAGNATGANGGCCAANNNANNCCNAAAGCCNAGCACNTCGGCG
AAGATCAGAATCCGANNTACCNNTN
RNA-2: "poor quality"; spliced form of RPL35, 98.1% >RNA-2-M13R_F02.ab1 NNNNNNNNNNNNNNNNNNNNNCTCGGANCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGCTGAAACAGCTGGACGACCTGAAGGTGGAGCTGTCCN NNCTGCGCGTCGCCAAAGTGACAGGGGGNGCGGCCTCCAAGCTCTCTAAGATCCGAGTCGTCCGGAAATCCATTGCCCGT GTTCTCACAGTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAAGTAGTACAAGCCCCTGGACCT GCGGCCTAAGAAGAAACGTGCCATGCNCCGCCGGCTCAATAANCACGANGANAACCTGAAAACCAAGAAGCAGCAGCGGA AGGAGCGGCTGTACCCGCTGCGGAAATACCCGGTCAAGGNCTGAGGGGCGCATTGTCAATAAAGCACAGCTGGNTGAGAA A
RNA-3: "poor quality; spliced form of BQBP1, 98.4% >RNA-3-M13R_F03.ab1 NNNNNNNNNNNNNNNNNNNNNNCTNNNNATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA CTNNNGGGGGANCCTTTTTTTTTTTTTTTTTTTTTTTTTCCCNNGANANGNTCTGNCAGGGATCGAGAGCGTGGNTATGA CAAGGTAGACAGANAGAGAGAGCGANNGNNNNAACGGGATCGGGACCGCGGGTATGANAAGGCAGACCGGGAANAGGGCA AAGAAGGGCGCCCCCATCGCCGGGAGGAGCNGNCTCCCTATCCCAAGAGCNAGAAGGCAGTAAGCCGAAAGGATGAAGAG TTANACCCCNTGGACCCTAGCTCATACNCNNACGCCCCCCGGGGCNGTNGNCAACAGGANTCCCCAAGNGGAATGAGGCN AAAAN
RNA-4: PQ; MTF1, 98.6% >RNA-4-M13R_F04.ab1 NNNNNNNNNNNNNNNNNNNNNTCGGATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACTA NAGGGGNNNCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGCCGACAAGCAGAGACTCCTTCAGACCCTCAAAC AGAAACATTAAGTGCCATGGATGTGTNAGAGTTTCTNTCCCTCCAGAGCCTGGACACCCCGTCCAATCTGATTCCCATTG AAGCACTACTGCAGGGGGAGGAGGAGATGGGCCTCACCAGCAGCTTCTCCAAGTNAAGGGCCCATGTGTGCTCCCCTCTG GGAAAAGCGGGTGAGCAGGAGGCATGAGGTACAATGCCTGCCATCATGGGTCAAAAATTTGAAGGATGAAAAAATCTACT GTTTGAAATCCTCACCTTTTAGACGTATTTTTTTTATTCAN
RNA-5: PQ; SNX9, 99.5% >RNA-5-M13R_F05.ab1 NNNNNNNNNNNNNNNNNCNNANNNNNNNNNCACNANTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC TATANNGNGNGNNTTTTTTTTTTTTTTTTTTTTTTTAACAGGNNCNNGNNACACCGTCAGCTCGAACTCAACACTGGCAG CCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCCTCCCGCTGCTTTCATTTTT CTGACCTAATAATTACGGGAAANGGAAAGTCTGGGCCANCANCNATAAAATGACACCAAAAATAAGTANANGANATCGAA T
RNA-6: no priming
RNA-7:PQ; CR594125, 94.6% >RNA-7-M13R_F07.ab1 NNNNNNNNNNNNTGNNNNNAGCTCGNATNNNNTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ANNGGGGNNNCCNTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCCCCGTGGTTTAATATGAACAGAGTTGAATATGACAT TGTCTGACAAAAGAATGAACAATTTGCTGAATAAAAGCCCCAAGTCAGGATATATACACAGAAGAAATGGAGCCTCAGAG TCTCAGCACTTGTGCNCAATGAAAGGAGAAATCTTTAAAAAAAAAAATCTGTAACAGAGGATAAAAATCAAAAGGCAGCA AGGACACCGACACTGGNGAGGTGGGAAAGGGGCTNNTCANCTACCAGCATGGGCTCNNCNGCTAGAGAGCTAACCNATNT CAAGGATTTTCAACNCTGAGGTGGGTTCCANNTCCCCTGNN
RNA-8: spliced NUCKS1, 99.7% >RNA-8-M13R_F08.ab1 NNNNNNNNNNNNNNNNNNNNNNTCGGNNCCNCTAGTNNCGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTCGAACTGCCATAGTCACTATCGTCATCATCTTCCATTAGGAAAT CTTCATCGCTGCCGGAATTCTCCTGGAATGGTGCCTCATCCTCCTCTTCTTGTTCTTCCTCACTGCCCACATCTTCCATG AGCATCTCTCTCTGTTTAGAAGCTGCTTTCGATGCCGCCTGCCGTTGTTGGCGCACATTTTTATGATCTTCTTTTTCATC TTCACTATCCTCTGCTGAGTGAGAATCATCCTTCTTGGTCTTCACATCTTTGTCTTCTGAGTCCTCACTATCTTCCTGTG AATTCTTTCCAGATCGCCTCTTATTTTTAGCTTCTCGGGGAGATGATCGAATTTTCTTAGTGGGAGGGCCCGAATCTCTT CCATAATCTTCATCTGCNTCATCAGATTCCTGAAACTGTGAGTAATCAACAACCTTCCTATTTCTGACAGGCCGCGACAT GTTCGCTGTCGAAACAGGACCGAGTCGAGAAGCCAAAGACCAGGACCCCCCCTACCCCGCGCGCTCGGCGCCCCACCCAA AANNNANNNAAANANAAAAGGGATACCCCTATNNNNNNTCGTATTNAAGCCNNNNNNNNGCAAGATATCCATCACACTGG NCGGCCGCTCGAGCATGCATCTAGAGGGNCCCAATTTCNCCCCTAT
RNA-9: no priming
RNA-10: spliced EST, 99.0% >RNA-10-M13R_F10.ab1 NNNNNNNNNNNNGNNNNNNNNNNNNCNNNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA CTATNGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCCTAGCTCATCCTGGCTCAAAAAGCACCCCCACTGA GCACCTTGCGACCCCCACTCCTGCCCGCCAGAGAACAAACCCCCTTTGACTGTAATTTTCCTTTACCTACCCAAATCCTA TAAAACAGCTCCACCCCTATCTCCCTTCACTGACTCTCTTTTCGGACTCGGCCCCCCTGCACCCAGGTGAAATAAACAGC CATGTTGCTCACACAAAGCCTGTTTGGTGATCTCTTCACATGGATGCACATGAAATTTGGTGCTGTGACTCAAATCGGGG GACCTCCCTTGGGAGATCAATCCCCTGTACTCCTGTTCTTTGCTCCATGACAAAGATCCACCTATGACCTCAGGTCCTCA GACCAACCANCCCAAGGAACATCTCACCGATTGTAAATCAGGTGAAGTATGAAGTTATGAGGAGAAAGGAACAGAGGACA ACCACACAGAGAAAGTGTAGCTTTATCTACTAGAGCTGAAGACATTCAAATTTATGATCCAACAATTCTACTCTGAAGTG CAGTGGTGNATATACTGCAACAATGTGTACTCATGTGCCCTGAGAACTANNNNTGAAAAAAACCTTACAGCAATATGCNT AATANNNNNNAAAAAAAAAAAAAAAAAAAANGGGATNCCCCCTATNGNNGNNTCNNNNTTAAAGCCAAATTCTGGCNGAN ANTNCNTCANN
RNA-11: PQ, CMTM3, 97.5% >RNA-11-M13R_F11.ab1 NNNNNNNNNNNNNNNNNNNANCNNNGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTATACGACTCACTAT AGGGGTANCCTTTTTTTTTTTTTTTTTTTTTTTTTGTCAGTCTGGCTTAATTCATTATGGCTTTTTTTCAGGGTAAGAAA TTCACACCCAAGAGAATAAGGCTACAAATGCTCCAAACATGGGTCCAGAACTCCGGCTCTTTTGTGAGGCCTAGAGTCAC AAAAAATGCCATCTGTTAAAAAGCTGCCTTTGCATAAAAAAATATAAAAAGTTACAAAATTCCATCAAAGACAGATACAC AGTATAAATCGTTAGGTGAACACAGAAAGCTGGTCTCATCTCCTGCAGTGGCCCATAAACCTGCCCTGANGTCTGGAAAT TCACTGTCCTGAGGGTCCAGGAACTCCTGCCTGCTGGCTGGGCTCTAGGAAGAAGGAGGGTTTGGCTGGGCCTGCCCAGC TCCCCATGACACTGTCACTGTGATGCCACTGTTGTACCCTCTGTCTTCTGGACCAGTCAGTCTATGAGCTCTTCTTTGAA ACAGTCGTAGACCCAGAATGGTCATCTCACCCCCAGAANACATGGTTTCCAAGGGTGGGAGGTGTTAGTTATGGGTGCCG AGCCCCACTTCCTGGGCGACAAGGCAAAAGGTCAATTTCCCCCTGCTTCAAGAATGAAGAGGGAACTGAAAAAAAAAAAA AAAAAAAAAAAAAAGGATACCCCTAANANTGAGTCNTATTAAANCCGAATTCTGCAANAATCCATNACNANTGGNGGCNG CTCGAANNNGCATTTAGAGGGNCCCNATNTCGCCCCTATANTGAGGTCNNAATANNAANTCACTGGCCCNTCNTTTTAAC AACNNTCNNTGNANNGGGAAAAACCCTGGCNGTTANCCCAATNTTNANTCGCCCTTGNAAGCANNNNCCCCCCTTTTNCC AGNCTGGGNGTAATAACCGAAAAGNNCCCNCANCNNNNCGCCCNTTCCCNANAGTTGCGCNACCNGANANNGNNAATGGG NCNGCNCCCNGNNNNCGGCGNNNTTATANNNNNGNNNNNNNNGN
RNA-12: PQ, HN1, 98.9% >RNA-12-M13R_F12.ab1 NNNNNNNNNNNNNNGNNNNNNNNNNTCGGANCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC ACTNNNAGGNGATNNTTTTTTTTTTTTTTTTTTTTTTTTTTTACNNGTCCTAAACTACTAAACCTGCATTAAAAATTTCG GTTGGGGCGACCTCGGANCAAAACCCAACCTCCGANCAGTACNTGCTAAGACTTCACCAGTCAAAGCGAACTACTATACT CAATTGATCCAATAACTTGNCCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATTCTATTCTAGAGTCCATATCAAC AATAGGGTTTACGACCTCNATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATT AAAGTCCTACGTGATCTGAGTTCAGACCGGAGNAATCCNNGTCGGTTTNTATCTACTTCAAATTCCTCCCTGTACGAAAG GACAAGAGAAATAAGGNCTACTTCACATAGNGCCTTCCCCCGTAAATGANATCATCTCAACTTAGTATNNTACCCACACC C
RNA-13: no priming
RNA-14: PQ, spliced TVC (truncated?) 87.6% >RNA-14-M13R_G02.ab1 NNNNNNNNNNNNNNNNNNNNNNTCGGNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGTACTGTGCTTTTATTAAAAAACAAAACAAAACAA AAAAAATACAATCAGGTACTGTCCAGACANGTTTGGGAAGGGAAAATCTCTTTTAAAGTCCTCAGTTTTCATCATCACCA TCACCATTATTATATTAATAATATTAATGTCCTTGAAATTTAAACAATATCACTTTTCTGGCTTCAGTTGTAGGAAATGT ACAAAACATCGAGGGTGGGGGTGGGGCAAGGGGTAACTTCCAATGACACAAGTTTCATCTTTGTGACCTCAACCAATAAC AATTGNACAGCTTTGTGTAAAACACAGCTGGCTCGGAGAATGACCATGTCCCCTGTATGGCCAGCTTGCCCCTCTCCCAT TCCCAGAGCCACCCAAGAGAAGTAAAATTCATGGTGTTGCTGTCACTAGGAGACTTTGCTCAATCGAACAAAAAAGTAGA AACTTGTAGACTGTTGTCTTTGGTGCAAAGGAAGTCGTTGCAGAGGGGCCTACCTCAGTGCCTCAGTGATCCGTGTGGTC TGCTTGGACGCCCATCAAATGCCCAAGGAGAGCTTCNNTGTNNNNNNTGGNTGTGTCGATGCTTTGGNAAAAATCCTTTC TTTTCTCTGGGGCCCCATTCCCTCTCTCACCNAATTATCCCTGGAATTTATGCCCNGCTTACGCCTGCCNTTCNANATTT CGGGAAGTTGCTGGGTNCTCAANTTTCANCTCACAAACTGGANTTGAGTACTCATGGCCCNTTNCAANNGGNAANCNAGT NTAANGCCCCTGACTGTNNATTATNGNNCCATATCTGCCCCATCAGGNNNCNCGATGACANTTCNNNAAAAAAAAAAAAA AAANNANAANAAAAANNGTNACCCCCTANNNNNAGTCTANTTTAAAGCCCNAATTCTCNGCNAAATANNNNTNNNNNNNG CNN
RNA-15: spliced and truncated PCNA, 88.4% >RNA-15-M13R_G03.ab1 NNNNNNNNNNNNNNNNNNNNNNGNNTCGGANCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC ACTANNNGGGNTCCTTTTTTTTTTTTTTTTTTTTTTTTACTTTNAAANTTGTTAACTTTATTTAAATTGTACAATATTTC TTAAACTGCATTTAGCGTCAAGATCNNNNNNGAGAATCACCAGTATTTGTAAAGCAGAAACATTCATGTTAACAAAACTA GTTTTTACTTTGGAGCTTATTCTTTAAGCAAATTATGGAGAATGGAGAGAAAAGAAAGTAGGTTATTTACAGAAGATATC TACATATTTTATTTTAATATTTAAGAATACTCAGGTACAAACTTGGTGACAGAAAAGACCTCAGGACACGCTGGCATCTC AGGAGCAATCTTCAAAGGTTTAGTTTTCTCAATTTCTAGCAATGCCTAAGATGCTTCCTCATCTTCAATCTTGGGAGCCA AATAATACTTTAAGTGTCCCATGTCAGCAATTTTATACTCTACAACAAGGGGCACATCTGCAGACATACTGAGTGTTACT GTTGNAGACAGTGGAGTGGCTTTTGTGAAAAAGTTCAGGTACCTCANAGCAAACGTTAGGTGAACAGGCTCATTCATCTC TATGGTTACCGCCTCCTCTTCCTTATCCACATTGCTTGTTTGTGACAACTNCCATGTTCCCGTTGCCAAGCTCTCCACTT GAAGAAAACTTAAAAAAAAAAAAAAAAAAAAAAGGATANCCCTANANNGAGTCNNATTTAAAGCCNAATTCTGCANATNN
DNA samples[edit]
- 15 colonies directly for TempliPhi, roughly ~500ng/ul in 10ul PCR, 3ul sending for sequencing (M13R provided by Genewiz)
- No priming: 1
- Vector seq: 3
- Non-coding region with poly A/T: 10
DNA-1: vector seq. no A tail >DNA-1-M13R_G04.ab1 NNNNNNNNNNNNNNNNNNNNNNCTCGGATNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCACAC TGNCNNCCGNNCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTT ACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTA ATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGGCG CATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCT TTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATT TAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGG TTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATC TCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGGTTAAANAATGAGCTGATTTAACAAAAATT TAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAACG GTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCANGTAGCTT GCAGTGGGCTTACATGGCGATAGCTAGACTGGGCGGTTTTATGGACAGCAAGCGAANCGGAATTGCCAGCTGGGGCGCCC TCTGGTAAGGTTGGGAAGCCCTGCANNACNGNNGNTCTGCNCAGNNNNGNNGNNNNNNNNNNNGNNGGNNNGGGGNANNA NNNNTCTNNAANAANNANNNGNGATGNNNGNTNNNTTTCNNATNNANNGAAANAANNNNGATTGCACCGCNGGTNNCNCC NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNACNGGGNNNNNN
DNA-2: vector; no A tail >DNA-2-M13R_G05.ab1 NNNNNNNNNNNNNNNNNNNNAGCTCGGATCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCACAC TGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTT ACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTA ATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGGCG CATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCT TTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATT TAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGG TTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATC TCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGGTTNNAAAATGAGCTGATTTAACAAAAATT TAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAACG GTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCNNTAGCTTG CAGTGGGCTTACATGGCGATAGCTAGACTGGCGGTTTTATGGACAGCAAGCGAACCGGAATTGCCAGCTGGGGCGCCCTC TGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCNGCCNGGATCTGATGGCGCAGGGGATCANATCT GATCAGAGACAGGATGANGNNCGTTTCCNCATGATTGAACAAGAATGGATTGCNNNNANGGTNNNNCNNNNNNTTNGGNN GNNANNGCTATNNNNNNTANNNNNN
DNA-3: Intergenic region with 20bp poly A >DNA-3-M13R_G06.ab1 NNNNNNNNNNNNNNNNCCNAGCTCGGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGAATTGTACTCCCATAATTCCCACATGTTGTGGGAGAGA GCTGGTGGGAGATAATTTGAATCATGGGGGTGGTTTCCCCCATACAGTTCTCATGGTAGTGAATAAATCTCATGAGATTG CATGGTTTTATCAGGGGTTTCTGCTTTTGTATCATCCTCGTTTTCTCTTGCCACTGCCATGTAAGAAGTGCCTTTCGGCC GGGTGCAGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCGATACC CTCCTGGCTAACACAGTGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGTGGGCGCCTGTAGTC CCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACG GCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGATACCCCTNATAGTGAG TCNNNTTAAAGCCGAATTCTGCANATATCCATTCACACTGGNGGCCGCTNGAGNNTNCCNTNTAAAAGGGCCCAATTCNC CCTANANTGAGTNCGTATTAACAATTCACTGGCCGTCGTTTTACAACGNCGTGACTGGGAAAACCCTGGCGTTTCCCCAN CTTAATCCGCCTNGCANCACATCCCCCTTTCGCCAGCTGGGGNAATANCGAAANANGCCCGCACCNNTNNGCCCTTCCCA ACAGTTGCNCANCCTGAATGGNAAANGGANNGCNNCCCTTGTAGCGNNN
DNA-4: intronic region with 40bp poly T >DNA-4-M13R_G07.ab1 NNNNNNNNNNNNNNNNNNNNNNNAANCTNGNNTCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGAC TCACTATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTATCAGAAGCAAAACCACAAAATCCTCACTCTCAAGGAAT GCACAGGCTATTGCAGAAGCCAGGAAGAAATCTATATTATTACAGAGTACTTATCTCAGAGGGTTGTTATAAATATTAAA TGAGAGTTATTTTATGGAATACATCTGATCTAGTGCCTGGCACATAAAAAGTGTTATATAAGTATCAGCTATTGTAATTA CAGAGTGACAAATAAAAGGTCGGAGTGCTATGGTTATGGAATAGAATGATGAGAAAGGAAACTTCCAGGAGCTTAGGTGT ACTTTAAGTGCAGGTATCAAATATTGATGCTTCATTATGGCAAGGGGGCTAACAAGTTGCCAGTGTGTCACAAGTCAACA TGCAGGCAAAGATGGAAACATTTTCCAGATCTAAAATGTAGTTAAATATGTTGTACTTTGGAATTGTATATGAACTTTAT TCCCCTTTCAGAATTACAAATCTCTTAGAAAGCCATTTTATTTCTTTCTGAAACTGAGTTATGATCATCTACTATTTAGC ACAGAAATAAAAGGGAGGGATAAAATCTACCAACCCAGCAAAGACACATCTTGCTTNNNNNNNTCTTGAGGAAGGCCTTC AGCAGAATGGAAAGATGACTCTCTGTTGATTACTCTATGTTGAGAACCTTAAGATTCAGATGGTATAGGATTCCAGCTAG GCAGTTGTGAACTGTCCATTTGTCTTATGCAAGAAAGTCTCNTTCAGCTTTCTGAACTTTTCTGTATTTCACATACTCAT TTCTAGTTCATGCTCATGTTCAAAGCTTGCTAGAATAGCATGAAAAAGTTTCCAAAGTAAACTCAGCATACTCAAANNTT TTTCTAGGNTTATTATCTNNNNNNGGAAAGGTGAAAAGANAGCTTGCNTTTANTTTTAAACNCTTACNNNNNNNNAAAAT ANNNNNCNCTGNCANNANNNNNAAANTGACTGGNNNGNGNNCNNNCNNNANCCAGNNNTTGGNGCNANGNNGGCNNNNNN N
DNA-5: intronic region with 30 poly A >DNA-5-M13R_G08.ab1 NNNNNNNNNNNNTNGNNNNNNNNNNCGGATNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCA CTATANGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTACTCTTTGAGATAATACAACTGGCACAGAAAAATAAGGAGGA ACAAGAGAAAGAAAATTCCTTCAAAAGAAAGAATATATACAAAGACTCTGAGGTGGAAGAGATTGGCCTTTTCAAGAAAT TAAAAGAAAATCCACGTGACTAAAGCATAATGAGCAAAGGAAAGCCCAGTCAACAGGGGCAGATTATATAAGGTCTTGGA TAAATAGTGTCTATTTCATTCAAAGTATAATGGAAAGACACTGGAGGGTTAAAGCAAGGAAGTAAAATCATCGAATTTAC TTTTTTCTTTTTTAATTCATGAAGCTATACTGTGGAGAATGGATTATAGACGGGTTAAAGAAAAACAATGAGGCCGGGCA CAGTGGCTCATACCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACGAGGTCAGGAGACCAAGACCATCCT GGCCAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTGATCCCAGCT ACTCAGAAGGCTGAGGCAGGAGAATCNTCTGAACCAGGGAGTCGGANATTGCAGTAAGCCGAGATCATGCCACTGCACTC CAGCTTTGGCAACAGAGTGAGACTCCCATCTCNAAAAAAAAAAAAAAAAANAAAAAAAANAAAAGGATACCCCTNTAGNG AGTCGTATTNAAGCCGAAATTCTGCANATATTCCATCACACTGGGNGG
DNA-6: interginc region with 30 poly A >DNA-6-M13R_G09.ab1 NNNNNNNNNNNNNNNNNNNNAGCTCGNNNCCNCTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC TATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAACTAAAATGAAATATTATCTCCCCCCAGTTAAAATG GCTTTTATCCAAAAAACAGGCAATAACGAACACTAGAGAGGATGTGAAGAAAAGGGAACCCTCGTACACTGTTGTTGGGA ATGTAAATTAAGACAACCACTATAGAGAACAGTTTGGAGGTTCCTCAAAAAACTAAAAATAGGGGTCCAGCACGGTGGCT CACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGCTCACAAAGTTAGGAGATCGAAACCATCCTGGTTGACA CAGTGAAACCCCGTCTCTACCAAAAACACAAAAAATTAGCTGGGCATGGTGGCAGGTCCCTGTAGTCCCAGCGACTCAGG AGGCTGAGGCAGGAGAATGGGGTGGACCCGGGAGGCAGAGCTTGCAGTAAGCTGAGATCACGCCACTGCACTCCAGCCTA GGCGACAGAGCGAGACTTGGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGATACCCCTATAGTGAGTCGNATTAAAGCCN AATTCTGNNAANATCCNTNACACTGGCGGCCGCTCGAGCATGCATCAAAAGGNNNCNAANTCGCCCTATNNNGANTCGNA TTNCANNTCACTGGCCGTCGTTTTACAACGTCNNACTGGNAAAACCCCTGGCGTTACCNAACTTAANNNNCTTGCAGCAC ATNCCCCCTTTCCNCCNGNTGGCGTTATANCGNAGAGGCCCNGCACCGGATCNCCCNTTCCCAANANTTNGCNNCNACCC TG
DNA-7: interginc with 15 poly T >DNA-7-M13R_G10.ab1 NNNNNNNNNNNNNNNNNNNNNNNNNTCNNNNCCNNTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTC ACNANNGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTAAGTATATTTTAAATATCCTAAACAAAATATTAGC AAAGTGAATCTAACAAACATACTTAACATTTTGTTGAGAATATTCTTATAGAAAGAATAATACACCACAAACAAGTGGGA TTTATTTCAGGGATGCAAGGCTGGTTCAACATTTAAAAATCAGTTAATGTTATCCATCACACCAACAAGCTAAAAAGGAA CAGTCATATATTCATATTAATAAATGAAGAAAAAGCAGTTGAAAAAATTCAACATTCAAGATTTAAAAAACAACAAATTA GGAGAGGACTTCCTCGACTTGTTAAGGAACATCTATAAAAAACCTATAGCTAACATCATATATAATGGTGAGAAACACAA ATCTCTTACATTAAGATCAGGGAAAAAGCAAGACTGTTCTCTGTCCCCACAGCTTTTCAACATTATATAGGAAGTTTAAG CTAATGCAATGAAAAAGAAAAGAAAAGGTAGATAAATTGGAAAAGGAGAAATTAAACTGTCTTTGTTTTCAGGTGACATA TTTACCTATGGAGAATATCCAAAGAAGCTGACGAGAAAAAAAACCTGAAACCCATAAGCAATTAGGTTTCAGGATAAACG GTTAATGTACAAAAGACAATTACTTTTTTATGCACCATCAATGGAAAATGAGACTTGAATTGTAAAATACAGTATCACTC ATATTAGCACCCAAAAATGAATAGAAANTAAATCAAGCAACATATGTACNAGATCTATATGAGAAAAACTATAAAAATCT GANCAAAAATATATCTAAGAAGAANCTAAATAAANNAAGAGAGTCCATGNTTCATGGANNAGAAANGACTAAANATNGTC AACTTGTCAGTTTCCNTNCCNNACTTGATCTACAGACNTNCACAAAAATCCTNCAGTCNAAAACCNNNCANCAAANTNTT NNNNNNNNNNNNNCCNNNNNAANNTGGATNCCNNNANNNNNATNNNNNNNAANANNCNGNANNNGCTNATNCNANACTNA AANNNNNGNAAATNNNNNNNTNNNN
DNA-8: intronic region, 16 poly A >DNA-8-M13R_G11.ab1 NNNNNNNNNNNNNNNNNNNNGCTCGGATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCACT ATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTCGGCATTTCGGAGGCCTAGGTGGGTGGATCACTTGAGGTCAGGA GTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCATCNCNACTAAAAATACAAAAATTAGCAGGGCGTGGTGGCAGGCC CTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCGGAGGTTGCAGTAAGCTGAGAT TGCACCACTGAACTCCAGCCTGGCTGATAAAACAAGACTTCAACTAAAAAAAAAAAAAAAAAAANAAAAGGATACCCCAA TA
DNA-9: intronic with 25 poly T >DNA-9-M13R_G12.ab1 NNNNNNNNNNNNNNNNNNNNNNCNNGNATCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCAC TATAGGGGTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTNGGTCTGTTGCCCAGGCTGGAGCACANCGGC NTGATCCTGGCTCACTGCAGCCTCCACCTCTGAGGTTCAGCAATTCTCCTGCTTNNGCTTGAGTAGCTGGTACTACAGGN ACATGCCACCATGCCCAGCTAATTTTTGTATTTTTGGTAAAGACAGGGTTTCGCCATGTTGGCCAGTCTGGTCTTGAANN CCTGACTTCAAGTGATCCACCAGCCTCAGCCTCCCAAAGTGG
DNA-10: no priming
DNA-11: intergenic with 22 poly A >DNA-11-M13R_H02.ab1 NNNNNNNNNNNNNNNNNNNNNNNGNNTCGNNNNNCACTAGTAACGGCCCGCNNAGTGTGNTGGAATTCGGCTTTAATACG ACTCACTNNNGNTNNTNTCCTTTTTTTTTTTTTTTTTTTTTTTTTATCTTCTGTTATAGTCACAATAACATGTTATGCCT TTGCTTGTATGTTCATCTCTCTCTGTGTACTAGCAGTCCATCCTAATAATGATCTTATCATCTGGAATATAATTGAATAT TACAATTGAGAATAAAATAGATTATCCAGATTATTTCAGTGAATATAAGTCTAGCTGACTAAGAGGGAAAAATAATTATA GATACCGTGACATCCCCACACCAACTTCTTGTAACAATGAGATGAGTGAAACTTTAATGAAACAGTGTTATCATCAAAGA CCTGCCAACCTAAAATTATCTGTTTTGATGAATTGTCATTAAATAAATGAAGACGCCAAAATAAAGATATTTTATACAAA AACTAAATCCCTTATTCCCTCAGAGAGTTTGTAGGTTTCATTCCAAAAAGCCACAATAAAGTGAATATTGCAATAAAGCA AGTCACACAAATTTTTTGGTTTCCCAGTGCATATAAAAGTTATGCTTGGGGCTGGGCACGGTGGCTCACGCCTGTAATCC CAGCTCTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCNNNNGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGT CTCTATTGAAAATACAAAAAATTAGTCGGGCGCAGTGGCGGGCGNCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGA NAATGGTGNCAACCNGGGGGGCGGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGTGACAGANCGAG ACTGCNTCTCNAAANAAAAANAAANNANAAAAANGNNACCCCNATAGNNGNGTCGTATAAANNCNNATTCTGCNNATNTC ATTNNCANNNNCGGNCNGCTCNAGCATGCATCTAGAGGGCCNAATTNNNCCTNTANNNAGTCGTATTANATTNACTGGCN GTNNTTTTANNANNGTNNNNGACNNNGGAAAANCCTGNNN
DNA-12: intergenic with 23 poly T >DNA-12-M13R_H03.ab1 NNNNNNNNNNNNTNGNNNNNNNNNTNGNNNNNNNANTANCGGCCGCCNGTGTGCTGGAATTCGGCTTTAATACGACTCAN NNTANNGGNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGANACAAGAGTNTCCCTCTGTCATCCAGGCTGGAGTGCAGTG GCGTGATGTTGGCTCACTGCAACCTCTGCCTGCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCTGAGTAGCTAGGATT GCAAGCACATACCACCATACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCT CAATCTCTTGACCTCGGGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACACGCNTGAGCCACCATGCATGGCCA AAAGCTGCTACNTCTAAAGGTGTTTCTTAGAAATAGCAAAGNANTATAGCCAGGAAAAACAATTACAACAGCCACAAACT CTAN
DNA-13: vector seq. >DNA-13-M13R_H04.ab1 NNNNNNNNNNNNNNNNNNNNNNNNCTCNNNNNNNCTAGTAACGGCCGCCAGTGTGCTGGAATTCTGCAGATATCCATCAC ACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTT TTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCG TAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGCCCTGTAGCGG CGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCG CTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGA TTTAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGAC GGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTA TCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCNNTTGGTTAAAAAATGAGCTGATTTAACAAAAA TTTAACGCGAATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAAGCCAGTCCGCAGAAA CGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCANGTAGC TTGCAGTGGGCTTACATGGCGATAGCTAGACTGGGCNGGTTTTATGGACAGCAAGCGAAACCGGAATTGCCAGCTGGGGC GCCCTCTGNTAAGGTGGGAAGCCCTGCAAAGTAAACTGGAATNGCTTCTTGCCGCCAAGGATCTGATGGCGCANGGGATC AAGAANCTGATCAANNANANNGNATGANGNATCGTTTCGCATGAATGAANAANAATGGAATTGCNCNCAGGNTNNNCNGN N
DNA-14: intergenic region with 16 poly T/G >DNA-14-M13R_H05.ab1 NNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNTCCACTAGTAACGGCCGCNAGTGTGCTGGAATTCGGCTTTAATACGA CTCACTATNGGGGNNTCCNTTTTTTTTNTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCCCCAAGTTGGAGTGNNN TGGCCCGN
DNA-15: intergenic region >DNA-15-M13R_H06.ab1 NNNNNNNNNNNNNNNNACNAGNNNGGANCCACTAGTAACGGCCGCCAGTGTGCTGGAATTCGGCTTTAATACGACTCNCN NNANNGNNNNGCNTTTTTTTTTTTTTTTTTTTTTTTCTCNGCNANNACCNNNAAATATCATGGTCTCTGGCAAGATGTCC AAAATCTGATTCAGGTCTTCCGGTCAGTCGTAGCCAGCTATCA