Blue:RNA-Seq Libraries: Difference between revisions

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== Sequencing Summary Table ==
== Sequencing Summary Tables ==


{| {{table}} border=1
[[Blue:RNA-Seq Libraries:2013|2013 Table]]
| align="center" style="background:#f0f0f0;"|'''Library'''
 
| align="center" style="background:#f0f0f0;"|'''Experiment'''
[[Blue:RNA-Seq Libraries:2014|2014 Table]]
| align="center" style="background:#f0f0f0;"|'''ID'''
| align="center" style="background:#f0f0f0;"|'''Sample'''
| align="center" style="background:#f0f0f0;"|'''TSO'''
| align="center" style="background:#f0f0f0;"|'''Condition'''
| align="center" style="background:#f0f0f0;"|'''Seq Run'''
| align="center" style="background:#f0f0f0;"|'''Lane'''
| align="center" style="background:#f0f0f0;"|'''Data Storage Location'''
| align="center" style="background:#f0f0f0;"|'''Analysis'''
|-
|BL-mCherryNPC-N2id81_92-Apr24||[[Blue:RNA-Seq Libraries:04242013|04242013]]||||hNPC lo/hi Pool||R04||RnaseIII||HL152||Lanes 6-8||/home/kunzhang/seqStore/130521_HL152||
|-
|BL-UHRR-IVT-May28||[[Blue:RNA-Seq Libraries:05282013|05282013]]||||UHRR||RL.IVT.N6/N9||RNaseIII||HL155||Lanes 1,2 (id1,2,4,5)||/home/kunzhang/seqStore/130627_HiSeq_RapidRun/BL-UHRR-IVT-May28||
|-
|BL_mESC_SingleCell_0614||[[Blue:RNA-Seq Libraries:06142013|06142013]]||||Single mESCs (60 cells)||R04 (one and two step)||RNaseIII, 94C 2min||HL155||Lane 8 (id81-84)||/home/kunzhang/seqStore/130628_HL155||
|-
|BL_mCherryNPC_0620||[[Blue:RNA-Seq Libraries:06202013|06202013]]||||human NPC sorts CD184+CD44-||R04||RnaseIII||HL155||Lanes1,2 (id1-5, 11-12)||/home/kunzhang/seqStore/130628_HL155||
|-
|BL_mESC_SingleCell_0621||[[Blue:RNA-Seq Libraries:06212013|06212013]]||||mESCs (34 cells)||R04 (one step)||94C 2min||HL155||Lane 8 (id13-18)||/home/kunzhang/seqStore/130628_HL155||
|-
|BL_mNPC_SingleCell_N2id81_Jul25||[[Blue:RNA-Seq Experiments:07252013|07252013]]||||Single mNPCs (60)||R04||94C 2min||HL157||Lane 3 (id81)||/home/kunzhang/seqStore/130807_HL157||
|-
|BL_mNPC_SingleCell_N2id82_Jul25||[[Blue:RNA-Seq Experiments:07252013|07252013]]||||Single mNPCs (60)||R04||94C 2min||HL157||Lane 4 (id82)||/home/kunzhang/seqStore/130807_HL157||
|-
|BL_huES8_SingleCell_N2id85_0820||[[Blue:RNA-Seq Experiments:08202013|08202013]]||||Single huESCs (30)||R04||RNaseIII||HL161||Lane (id85)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_huES8_SingleCell_N2id86_0820||[[Blue:RNA-Seq Experiments:08202013|08202013]]||||Single huESCs (30)||R04||RNaseIII||HL161||Lane (id86)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_huES8_SingleCell_N2id87-88_0820||[[Blue:RNA-Seq Experiments:08202013|08202013]]||||250pg UHRR||R04||RNaseIII||HL161||Lane (id87,88)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_UHRR_N2id9-12_0910||[[Blue:RNA-Seq Experiments:09102013|09102013]]||||500pg UHRR||R04-R05||RNaseIII, 94C 2min||HL160||Lane 3 - 20% (id9-12)||/home/kunzhang/seqStore/130925_HL160||
|-
|BL_UHRR_N2id13-14_0910||[[Blue:RNA-Seq Experiments:09102013|09102013]]||||500pg UHRR||Smarter||RNaseIII, 94C 2min||HL161||Lane (id13, 14)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_UHRR_N2id9,12_Sept18||[[Blue:RNA-Seq Experiments:09182013|09182013]]||||1ng UHRR||STRT_V2_3,R03||RNaseIII||HL161||Lane (id9, 12)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_UHRR/HuNu_N2id15-20_Sept27||[[Blue:RNA-Seq Experiments:09272013|09272013]]||||1ng UHRR, HuNu, msLCM||R06||RNAseIII (5-10min)||HL161||Lane 5(id15-20)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_UHRR/HuNu_N2id21-28_Sept27||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id21||100pg UHRR||R06||RNaseIII (10min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx21.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id22||100pg UHRR||R06||RNaseIII (10min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx22.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id23||100pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx23.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id24||100pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx24.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id25||10pg UHRR||R06||RNaseIII (10min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx25.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id26||10pg UHRR||R06||RNaseIII (10min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx26.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id27||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx27.txt||
|-
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id28||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt||
|-
|BL_huES8_SingleCell_N2id-90_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||250pg UHRR||R06||RNaseIII||HL161||Lane (id90)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_huES8_SingleCell_N2id-89_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||Single huESCs (30)||R06||RNaseIII||HL161||Lane (id89)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL-LCM-10Cell_N2id1_4,7,8-Oct3||[[Blue:RNA-Seq Experiments:10032013|10032013]]||id1||msLCM 10 cell (C1)||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|||||id2||msLCM 10 cell (C3)||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|||||id3||msLCM 10 cell(T1)||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|||||id4||msLCM 10 cell (T4)||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|||||id7||msLCM 100pg||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|||||id8||msLCM 100pg||R06||RNaseIII||HL161||Lane (id1-4, 7, 8)||/home/kunzhang/seqStore/131009_HL161||
|-
|BL_totoRNAseq_10ngUHRR_Nov13||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id1||UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx01.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id2||UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/3'dATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx02.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id3||UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/dATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx03.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id4||UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx04.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id5||UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/3'dATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx05.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id6||UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/dATP)||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx06.txt||
|-
| ||[[Blue:RNA-Seq Experiments:11132013|11132013]]||id7||UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP) then added 3'dATP||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx07.txt||
|-
|BL_totoRNAseq_1ngUHRR_Dec03||[[Blue:RNA-Seq Experiments:12032013|12032013]]||id81||UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 8||kunzhang/seqStore/131220_HL162/s_8_1_Indx81.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12032013|12032013]]||id82||UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 8||kunzhang/seqStore/131220_HL162/s_8_1_Indx82.txt||
|-
|BL_totoRNAseq_1ng_100pgUHRR_Dec06||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id9||UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx09.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id10||UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx10.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id17||UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx17.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id18||UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx18.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id11||UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx11.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id12||UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx12.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id19||UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx19.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12062013|12062013]]||id20||UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min||R06||RNaseIII||HL162||Lane 3||kunzhang/seqStore/131220_HL162/s_3_1_Indx20.txt||
|-
|BL_totoRNAseq_10pgUHRR_Dec10||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id89||UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1 ||kunzhang/seqStore/131220_HL162/s_1_1_Indx89.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id90||UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx90.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id91||UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx91.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id92||UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx92.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id93||UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx93.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id94||UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx94.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id95||UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx95.txt||
|-
| ||[[Blue:RNA-Seq Experiments:12102013|12102013]]||id96||UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min||R06||RNaseIII||HL162||Lane 1||kunzhang/seqStore/131220_HL162/s_1_1_Indx96.txt||
|-
|}


== Additional Libraries Sequenced  ==
== Additional Libraries Sequenced  ==

Latest revision as of 00:44, 6 February 2014

Sequencing Summary Tables[edit]

2013 Table

2014 Table

Additional Libraries Sequenced[edit]

12102012

02122013

02222013

03192013

04252013



Data Analysis[edit]

06202013