Daniel:Notebook/GenomeMiner/2013-9-26: Difference between revisions
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>Djacobse (Created page with "=Mock HL155 (Started 9/9/2013)= Back to Calendar ==More BWA Align== Checking a few more bwa alignme...") |
>Djacobse |
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(2 intermediate revisions by the same user not shown) | |||
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Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data. | Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data. | ||
===Error Counting Results=== | ===Error Counting Results (1 Error per Read, Full Reference Sequence)=== | ||
Error Rate: 1.35% | Error Rate: 1.35% | ||
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Error Rate of Deletions: 0.041% | Error Rate of Deletions: 0.041% | ||
Error Rate of Substitutions: 1.09% | Error Rate of Substitutions: 1.09% | ||
Alignment %: 99.77% | |||
===Error Counting Results (1 Error per Read, Short Reference Sequence)=== | |||
Error Rate: 1.30% | |||
Error Rate of Insertions: 0.226 | |||
Error Rate of Deletions: 0 | |||
Error Rate of Substitutions: 1.07% | |||
Alignment: 96.75% |
Latest revision as of 18:38, 26 September 2013
Mock HL155 (Started 9/9/2013)[edit]
More BWA Align[edit]
Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data.
Error Counting Results (1 Error per Read, Full Reference Sequence)[edit]
Error Rate: 1.35% Error Rate of Insertions: 0.221% Error Rate of Deletions: 0.041% Error Rate of Substitutions: 1.09% Alignment %: 99.77%
Error Counting Results (1 Error per Read, Short Reference Sequence)[edit]
Error Rate: 1.30% Error Rate of Insertions: 0.226 Error Rate of Deletions: 0 Error Rate of Substitutions: 1.07% Alignment: 96.75%