Daniel:Notebook/GenomeMiner/2013-9-26: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Djacobse
(Created page with "=Mock HL155 (Started 9/9/2013)= Back to Calendar ==More BWA Align== Checking a few more bwa alignme...")
 
>Djacobse
 
(2 intermediate revisions by the same user not shown)
Line 7: Line 7:
Checking a few more bwa alignments that might yield interesting results.  In this case I'm checking the 1 per read error data.
Checking a few more bwa alignments that might yield interesting results.  In this case I'm checking the 1 per read error data.


===Error Counting Results===
===Error Counting Results (1 Error per Read, Full Reference Sequence)===


  Error Rate: 1.35%
  Error Rate: 1.35%
Line 13: Line 13:
  Error Rate of Deletions: 0.041%
  Error Rate of Deletions: 0.041%
  Error Rate of Substitutions: 1.09%
  Error Rate of Substitutions: 1.09%
Alignment %: 99.77%
===Error Counting Results (1 Error per Read, Short Reference Sequence)===
Error Rate: 1.30%
Error Rate of Insertions: 0.226
Error Rate of Deletions: 0
Error Rate of Substitutions: 1.07%
Alignment: 96.75%

Latest revision as of 18:38, 26 September 2013

Mock HL155 (Started 9/9/2013)[edit]

Back to Calendar

More BWA Align[edit]

Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data.

Error Counting Results (1 Error per Read, Full Reference Sequence)[edit]

Error Rate: 1.35%
Error Rate of Insertions: 0.221%
Error Rate of Deletions: 0.041%
Error Rate of Substitutions: 1.09%
Alignment %: 99.77%

Error Counting Results (1 Error per Read, Short Reference Sequence)[edit]

Error Rate: 1.30%
Error Rate of Insertions: 0.226
Error Rate of Deletions: 0
Error Rate of Substitutions: 1.07%
Alignment: 96.75%