Daniel:Notebook/GenomeMiner/2013-10-3: Difference between revisions
Jump to navigation
Jump to search
>Djacobse (Created page with "=HL155= Back to Calendar ==Novoalign on HL155 (Started 10/02/2013)== '''Concatenate fq files into ...") |
>Djacobse |
||
(One intermediate revision by the same user not shown) | |||
Line 7: | Line 7: | ||
'''Concatenate fq files into 1''' | '''Concatenate fq files into 1''' | ||
cat s_2_1_Indx11.txt s_2_1_Indx12.txt s_2_1_Indx13.txt s_3_1_Indx10.txt s_3_1_Indx11.txt s_3_1_Indx12.txt > hl155_indx10to13.fq | cat s_2_1_Indx11.txt s_2_1_Indx12.txt s_2_1_Indx13.txt s_3_1_Indx10.txt s_3_1_Indx11.txt s_3_1_Indx12.txt > hl155_indx10to13.fq | ||
'''Novoalign on V4S1''' | |||
novoalign -d index_v4s1fullrevcomp.ndx -f ../../hl155_indx10to13.fq -F ILMFQ -r ALL -o SAM -o FULLNW > novo_v4s1.sam | |||
This took forever and never finished. |
Latest revision as of 20:37, 7 October 2013
HL155[edit]
Novoalign on HL155 (Started 10/02/2013)[edit]
Concatenate fq files into 1
cat s_2_1_Indx11.txt s_2_1_Indx12.txt s_2_1_Indx13.txt s_3_1_Indx10.txt s_3_1_Indx11.txt s_3_1_Indx12.txt > hl155_indx10to13.fq
Novoalign on V4S1
novoalign -d index_v4s1fullrevcomp.ndx -f ../../hl155_indx10to13.fq -F ILMFQ -r ALL -o SAM -o FULLNW > novo_v4s1.sam
This took forever and never finished.